Variovorax sp. PMC12: C4F17_23025
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Entry
C4F17_23025 CDS
T05380
Name
(GenBank) sugar ABC transporter substrate-binding protein
KO
K10439
ribose transport system substrate-binding protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
vam02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_23025
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
C4F17_23025
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_23025
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
Ribose transporter
C4F17_23025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
Peripla_BP_3
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AVQ83591
LinkDB
All DBs
Position
1:complement(4937896..4938849)
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AA seq
317 aa
AA seq
DB search
MKFTRRTLQSAAALTLLGAIAGTPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHA
SEYTLVANGIKDETDTSAQIKMVEQMVAQKINALVIAPADSKALVPVIKAAIDKGILVVN
IDNQLDAAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFNAQQR
TLGYQDAMKAAGVTVVGVQSGQWEIDKGNTVAAGMMREHPDLKALLAGNDSMALGAVAAV
KAAGKTGKVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETALKAIADKKKQAD
MPAEVKTDVVLVTKSSK
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacccgccgtaccctgcaaagcgctgctgcattgacgctgctgggcgccatc
gccggaacgcccgccttcgcccaggacaagccgaaggtcgcgctggtcatgaagtcgctg
gccaacgagttcttccgcaccatggaagacggcgccaaggcgcaccagaaggcccatgcc
tccgaatacacgctggtggccaacggcatcaaggacgagaccgacacctccgcgcagatc
aagatggtcgagcagatggtggcgcagaagatcaacgcgctggtcatcgcgccggccgat
tcgaaggcgctggtgccggtcatcaaggccgccatcgacaagggcatcctggtggtcaac
atcgacaaccagctcgacgccgccgcgctcaaggaaaagggcatccaggtgccgttcgtc
ggccccgacaaccgcgccggcgccaagctggtgggcgacgcgctcgccaaggagctgaag
tcgggcgacaaggtcggcatcatcgagggcgtgtcgaccaccttcaatgcgcagcagcgc
acgctgggctaccaggacgcgatgaaggccgccggcgtgacggtggtgggcgtgcagtcc
ggccagtgggaaatcgacaagggcaacacggtggccgccggcatgatgcgcgagcacccc
gacctgaaggcgctgctcgcgggcaacgacagcatggcgctgggcgccgtggccgccgtc
aaggccgccggcaagaccggcaaggtgctggtggtgggctacgacaacatcggcgccatc
aagccgatgctggccgacggccgcgtgctcgccacggccgaccagttcgccgccaagcag
gccgtgttcggcatcgagaccgcgctgaaggccatcgccgacaagaagaagcaggccgac
atgcccgccgaagtgaagaccgacgtggtgctggtcaccaagtcgtccaagtaa
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