Variovorax sp. PMC12: C4F17_23115
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Entry
C4F17_23115 CDS
T05380
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_23115
Enzymes [BR:
vam01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
C4F17_23115
DNA repair and recombination proteins [BR:
vam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
C4F17_23115
Prokaryotic type
C4F17_23115
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AVQ83609
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Position
1:complement(4958463..4959962)
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AA seq
499 aa
AA seq
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MPPILLAVDKTYPKGLMWFRRDLRVDDNAALYRALRACRQVVCVFVFDKAILDPLPTVDR
RVEFIRESLVELEAELRALGGGLIVRHGLAAHEIPALARDLDVQAVFANRDDEPDALERD
AKVFGALANAGVTFHTYKDSTVFDRDEVMTKTGQPYTVFTPYKRAWLAKVDSFFLKSYPV
RGHADALAPPPEAYREPVPTLREIGFEKSNLSTLEMPTGTKGAGALFEDFFERIDRYDEA
RNFPAVRGPSYMGVHLRFGTVSIRQMASLAHQLSLQGNAGAATWLSELIWRDFYFQILAH
FPHVHTGGESKSFRPEYDKIQWHHGKHADQLFDAWCQGRTGYPLVDAAMLQINQSGYMHN
RLRMVVASFLCKDLGLDWRRGEAYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNP
VTQSERFDPEGKFIRRYLPQLAGLSNAAIHAPWMASPVELEAAGIKLGETYPKPVVDHAE
AREKTLQRYGVARAKALQK
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgcctccgattttactggccgtcgacaagacctatcccaaagggctcatgtggttccgc
cgcgaccttcgcgtggacgacaacgctgccctctaccgcgcgctgcgagcctgccgtcag
gtcgtctgcgttttcgtattcgacaaggcgatcctggatccgctgcccaccgtcgaccgg
cgggtggaattcatccgcgaatccctggtggagctggaagccgagctgcgcgcgctgggc
ggcgggctcatcgtgcggcacgggctggccgcgcatgagatcccggcgctggcccgcgac
ctcgacgtgcaggccgtgttcgccaaccgcgacgacgagcccgacgcgctggagcgcgac
gccaaggtgttcggcgcgctggccaacgccggcgtcaccttccacacctacaaggactcg
accgtcttcgaccgcgacgaggtcatgaccaagaccggccagccgtacacggtgttcacg
ccctacaagcgggcctggctggccaaggtcgactcgttcttcctcaagtcgtacccggtg
cgcggccatgccgacgcgctggcgccgccacccgaggcctaccgcgagccggtgcccacg
ctgcgcgagatcggcttcgagaaaagcaacctgtcgacgctggaaatgccgaccggcacc
aagggcgccggcgcgctgttcgaagatttcttcgagcgcatcgaccgctacgacgaagcc
cgcaacttcccggcggtgcgcggccccagctacatgggcgtgcacctgcgcttcggcacg
gtgtcgatccggcagatggcgagcctggcgcaccagctctcgctgcagggcaatgccggg
gcggcgacctggctcagcgagctgatctggcgcgacttctacttccagatcctggcgcac
ttcccgcacgtgcacaccggcggcgagtcgaagagcttccgccccgagtacgacaagatc
cagtggcaccacggcaagcatgccgaccagctgttcgacgcctggtgccagggccgcacc
ggctacccgctggtggacgcggccatgctgcagatcaaccagagcggctacatgcacaac
cgcctgcgcatggtggtggcgagcttcctgtgcaaggacctggggctggactggcggcgc
ggcgaggcctacttcgcgctgcacctgaacgacttcgagctggcgtccaacaacggcggc
tggcagtgggccagctcgagcggctgcgacgcgcagccttacttccgcatcttcaacccg
gtgacgcagagcgagcgcttcgaccccgaaggcaagttcatccgccgctacctgccgcag
ctggcggggctgtcgaacgcggcgatccacgcgccctggatggcgtcgccggtggagctg
gaggcggcaggcatcaagctcggcgagacctatcccaagccggtggtcgaccacgccgag
gcgcgcgagaagacgctgcagcgctatggcgtggcgcgggccaaggcgctgcagaaatga
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