Variovorax sp. PMC12: C4F17_23245
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Entry
C4F17_23245 CDS
T05380
Name
(GenBank) translocation/assembly module TamB
KO
K09800
translocation and assembly module TamB
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_23245
Transporters [BR:
vam02000
]
Other transporters
Pores ion channels [TC:
1
]
C4F17_23245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TamB
AsmA
Motif
Other DBs
NCBI-ProteinID:
AVQ83632
LinkDB
All DBs
Position
1:complement(4983377..4987468)
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AA seq
1363 aa
AA seq
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MQTEANHTDPAGAPTHTPPAARRSRTRRALRAFAWTVLGLFVAVLLLGAGAWWWLGSNKS
LAFALAQAAQRLPAGQTLESRDVTGSLRTGGHIGWLKYQSESIAVEVNDATIGWQLAPLF
QRKVQLGEVHAKQVLIEKRGPPSDKPAEPLQQLALPVDVDVPFRIDEVRWAGPPALQALN
LSGSYSYKAAEHALEVKGVDIADGHYSARVKLQGPAPMAIDASLKGRVKAPLAEDRDIDV
LAEATVKGTLAGTEARLQVAAELKPAEENADAPMEARLQAQIAPWLPQPVIDAKADLRNV
DASSLWPGAPQTRLTGTVELTPDTDTGPAAWKASADIRNSVAGPWDEEKLPVEQVQAHVG
FDGTSWTIPEATVRAGGGRIDAAGKWSPAPAPWQAQATVRGVRPGALYSELSGAPVSGTI
KAEQKESTISFDAALRAEGGAGSKALPGFALDRALAQGQWKDQVLDLRTLRIEAQRASLD
GKLQVRVADQAGSGKLNLVLPGGSAQVEGRIAPTTGGGDIKASIDDADAVQRWVQGLPGL
SNVFANASAKGSARLDASWQGGWQTIQRRLQNANAPAQRGIAEPTLKAMLGVPRLDLLLP
ASAPGAAATAVQLNGLRAELAGSLAQASLTLQGEATTGTQKFTIDTRASGGLAGTDQWRA
ALASLRLQAQDSARPGAPWVLELSREVTATIRSTSGNAARLDVEASAAAATLRGPVPGTV
RIDWQPLRFSQSGAAPNRVFRVQSKGQLQGLPMAWAGALGANTTLGEYGISGDLMFDGDW
DIDAGDTLRVKARIARQSGDIRVQAGEAALVTRIVSTGTGTASERTMNSATAPNGVEAPS
TPAGLRQAELRLDAQGDAVRATLAWDSERAGKINADIDTRVQQRAGGWQWAPDAPLGGTI
KASLPNLGVWSMLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGADKLALRAPVEGLDLR
DGRLRASLNGERVEITEFTLKGGAGSSARIAGQSGNRSTAASEARSDGGTLSATGDLSWG
PASGTASGVRMAMQGQLRALRVLVRTDRQVTLSGDLQAKLDNGQFTVRGKLRTDRAVIIL
PDETAPSLGSDVVVRSAAKDREAAEAAKRESERADAQAAKPQTAKPPDIVVNFDLGDDFA
VQGRGITTRLEGDLEIRSTRLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNGPFDN
PALDILAIRPNLSQRAGVQITGTAQSPRVKLYSEPALSDAETLSWVILGRASATSGGESA
LLQQAALSLLGKIGGSGSGGSLASRFGLDELGFKGPGSGGDLRESAVTLGKRLSKDFYIT
YERSIGGTFGTLFIFYDLTTRLTLRGQAGQTSGLDLIYTVKYD
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccgaagccaaccacaccgatcccgccggcgcaccgacgcatacgccccccgcc
gcacggcgctcgcgcacgcgccgcgcgctgcgcgcattcgcctggaccgtgctcggcctg
ttcgtggccgtgctgctgctgggtgcgggcgcgtggtggtggctgggctccaacaagtcg
ctggccttcgcgctcgcccaggcggcgcagcgcctgcccgccgggcagacgctggaaagc
cgcgacgtcaccggctcgctgcgcaccggcggccacatcggctggctcaagtaccagagc
gagagcatcgccgtcgaggtgaacgacgccaccatcggctggcagctcgcgccgctgttc
cagcgcaaggtacagctgggcgaggtgcacgcgaagcaggtgctgatcgaaaagcgcggc
ccgccgagcgacaagcccgcggagccgctgcagcagctggcgctgccggtcgatgtcgac
gtgccctttcgcatcgacgaagtgcgctgggccggcccgcccgcgctgcaggcgctcaac
ctgtcgggcagctacagctacaaggccgccgagcatgcgctcgaagtgaagggcgtggac
attgccgacggccactacagcgcgcgcgtcaagctgcagggccccgcgccgatggcgatc
gacgcctcgctcaaaggccgcgtgaaggccccgctggccgaggaccgcgacatcgacgtg
ctggccgaagccaccgtcaagggcacgctcgcaggcaccgaagcccgcctgcaggtggcc
gccgagctcaagcccgccgaggaaaacgccgacgccccgatggaagccaggctgcaggcg
cagatcgccccttggctgccgcagccggtgatcgacgccaaggccgacctgcgcaacgtg
gacgcctccagcctgtggcccggcgcgccgcagacccggctcaccggcaccgtcgaactc
acgcccgacaccgacaccggcccggccgcatggaaggcatcggccgacatccgcaacagc
gtggccggcccgtgggacgaagaaaagctcccggtcgaacaggtgcaggcccacgtcggc
ttcgacggcaccagctggaccattcccgaagccaccgtgcgcgcgggcggcggccgcatc
gacgcggccggcaagtggagccccgcgcccgccccctggcaggcccaggccaccgtgcgc
ggcgtgcggcccggcgcgctgtacagcgagctttccggcgcgccggtgagcggcacgatc
aaggccgagcagaaggaaagcaccatcagcttcgacgccgcgctgcgcgccgaaggcggc
gccggcagcaaggcgctgcccggcttcgcgctcgaccgcgcgctggcccagggccagtgg
aaagaccaggtgctcgacctgcgcaccctgcgcatcgaagcccagcgcgccagcctcgac
ggcaagctgcaggtgcgcgtggccgaccaggccggcagcggcaagctcaacctcgtgctg
ccgggcggcagcgcgcaggtcgaaggccgcatcgcgcccaccaccggcggcggcgacatc
aaggccagcatcgacgatgccgacgccgtgcagcgctgggtgcagggcctgccggggctg
tcgaacgtgttcgcgaacgccagcgccaagggctccgccaggctcgatgcaagctggcag
ggcggctggcagaccatccagcgccgcctgcagaacgcgaacgcgccggcgcagcgcggc
atcgccgagcccacgctcaaggccatgctgggcgtgccccggctcgaccttctcctgccg
gcctcggcgcccggcgccgccgccaccgccgtgcagctgaacggcctgcgcgccgaactc
gcgggcagccttgcgcaagccagcctcacgctgcagggcgaagccaccaccggcacccag
aaattcaccatcgacacccgcgccagcggcggcctcgcgggcaccgaccagtggcgcgcc
gcgctcgccagcctgcgcctgcaggcccaggacagcgcccgccccggcgccccctgggtg
ctggagctgagccgcgaggtgacggccaccatccgcagcaccagcggcaacgccgcgcgc
ctggatgtcgaagcctccgccgccgcggccaccctgcgcggccccgttcccggcaccgtg
cgcatcgactggcagccgctgcgcttcagccagagcggcgcggcgcccaaccgcgtgttc
cgcgtgcagtccaagggccagctgcagggcctgcccatggcctgggccggcgcgctcggc
gccaacaccacgctgggcgaatacggcatcagcggcgacctgatgttcgacggcgactgg
gacatcgacgccggcgacacgctgcgtgtcaaggcccgcatcgcgcgccagagcggcgac
atccgcgtgcaggccggcgaggccgcgctggtcacgcgcatcgtgagcaccggcacgggc
accgccagcgaacgcaccatgaactccgccaccgcccccaacggcgtcgaggcccccagc
accccggccggcctgcgccaggccgagctgcggctggatgcccagggcgacgccgtgcgc
gccaccctggcgtgggacagcgaacgcgccggcaagatcaacgccgacatcgacacccgc
gtgcagcagcgcgccggcggctggcagtgggcgcccgacgcgccgctgggcggcaccatc
aaggccagcctgcccaacctgggcgtgtggtcgatgctcgcgccgccgggctggcgcatt
gccggcacgctcgacgccgccgccaccctgtcgggcaaccgcgccgtgccgcgctggaac
ggcacgctgggcgccgacaagctcgcgctgcgcgcgcccgtcgaagggctggacctgcgc
gacggccggctgcgcgcctcgctgaatggcgagcgcgtggaaatcaccgaattcacgctc
aagggcggcgccggcagctccgcgcgcattgccggccagagcggcaaccgcagcaccgcg
gccagcgaggcccgctccgacggcggcacgctgtcggccaccggcgacctcagctggggc
ccggccagcggcaccgcatcgggcgtgcgcatggccatgcagggccagttgcgcgcgttg
cgcgtgctggtgcgcaccgaccggcaggtcacgctctcgggcgacctgcaggccaagctg
gacaacggccagttcaccgtgcgcggcaagctcaggaccgaccgcgccgtcatcatcctg
cccgacgaaaccgcgcccagcctgggcagcgacgtcgtcgtgcgctccgccgccaaggac
cgcgaggccgccgaggcggcgaaacgcgaatccgagcgcgccgacgcccaggccgcgaag
ccgcagaccgccaagccgccggacatcgtcgtcaacttcgacctgggcgacgacttcgcg
gtgcagggccgcggcatcaccacccgcctggaaggcgacctggaaatccgcagcacccgg
ctgaacgccccgccgcgcatcaccggcgaggtgaagaccgtgaagggccagtaccgcgcc
tacggccagcagctcgacgtggagaccggcgtggcccgcttcaacggccccttcgacaac
cccgcgctggacatcctggccattcgcccgaacctgtcgcagcgtgcgggcgtgcagatc
accggcaccgcgcaatcgccgcgcgtgaagctgtattccgagcccgccctgtcggacgcc
gaaaccctgtcatgggtgattctgggccgcgcatcggccaccagcggcggcgaatcggcg
ctgctgcagcaggccgcgctgtcgctgctcggcaagatcggcggcagcggctccggcggc
agcctggccagccgcttcgggctggacgaactgggcttcaagggcccgggcagcggcggc
gacctgcgcgaatcggcggtgacgctgggcaagcggctttcgaaagacttctacatcacc
tacgagcgcagcatcggcgggaccttcggcacgctgttcatcttctacgacctgaccacc
aggctcacgctgcgggggcaggcggggcagacgagcgggctggatctgatctatacggtg
aagtacgactga
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