Variovorax sp. PMC12: C4F17_23320
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Entry
C4F17_23320 CDS
T05380
Name
(GenBank) ABC transporter
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_23320
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_23320
02044 Secretion system [BR:
vam02044
]
C4F17_23320
Transporters [BR:
vam02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
C4F17_23320
Secretion system [BR:
vam02044
]
Type I secretion system
Adhesin protein transporter
C4F17_23320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
AAA_29
AAA_23
AAA_27
AAA_25
AAA_15
AAA_16
AAA_22
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AVQ83645
LinkDB
All DBs
Position
1:5004897..5006714
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AA seq
605 aa
AA seq
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MIKFLLPSQLVADTPDEPGASPYAGALHEAFRAAYPLVKGAAWRSLPISLFGLLPSIFLL
QVYDRVLSRSGTSTLAALVSGIFFFLCIEFWLRTRRSRLLRNAGAIIDHGVSGALLNSML
SRPLRALESRPASSWQLYFRDVGSVRGTVTGGLAQSIFDLPMAIFALVVIGIVALPVLPV
VAVFLAIMSFLAWWWADEVRTGRVEEVQRGRGLDRITSEICHARETLKTQANDGPTIETW
RQAYNAWLTESFTKNGQIETARDGTTVLLTVFSVIVVTVGAVSVMEQWMTVGGLVASNML
ALKALQPVAGLVSNWRSLATAKEAAKRLETVLREPVEKPPTGMELPQPLGRVTLRDVSFS
FAETAQQPVLENVDLDIGPGGLHVIVGRNGAGKSTLVKLVSGLYTPTRGTVSIGEYDLSQ
FGREELSRWISYLSQEVYWFGGALVDVMRRGAPGQSDEQIVAACKLSGAHDFISRLPDGY
RTVVGEGGTGFSVGERRKLALAMSFLRKPSVLVLDEPSNDLDFQSERNLLATMLAVAKVR
TVVVVTHSLRIVSAATVVYHVTGQGNVEQGSAAVMVPKLFGVKKPLVAVGDSEDSAGAAA
TRSMA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagttcctcttgcccagccagctggttgccgacacgccagacgaacctggtgcc
agtccctatgcgggcgcgctgcatgaagcgtttcgcgcggcgtatccgctggtcaagggc
gcggcttggcgctcgctccccatcagcctgttcgggctgctgccttcgatcttcctgctg
caggtgtacgaccgcgtgctgtcgcgcagcggcacctcgacgctcgccgcgctggtgagc
ggcatcttcttcttcctgtgcatcgagttctggttgcgcacgcggcgctcgcgcctgctg
cgcaacgcgggcgccatcatcgaccacggcgtgtcgggtgccttgctgaactcgatgctg
tcgcgcccgctgcgcgcgctggagtcgcggcccgcttcgtcgtggcagctgtacttccgc
gacgtgggttcggtgcgcggcaccgtcaccggcggcctcgcgcaatcgatcttcgacctg
cccatggccatcttcgcgctggtcgtgatcggcatcgtcgcgctgccggtgctgccggtg
gtggccgtgttcctggccatcatgtctttcctggcgtggtggtgggccgacgaagtgcgc
accggccgtgtggaagaagtgcagcgcgggcgcggcctggaccgcatcacctccgagatc
tgccatgcgcgcgagacgctgaagacgcaggccaacgacggtcccaccatcgagacgtgg
cgccaggcctacaacgcctggctcaccgagagcttcaccaagaacggccagatcgaaacc
gcgcgcgacggcaccaccgtgctgctgaccgtgttctcggtcatcgtggtcacggtgggt
gcggtgtcggtgatggagcaatggatgacggtgggcggcctggtcgcctccaacatgctg
gcgctcaaggcgctgcagccggtggccgggctggtgtcgaactggcgctccctggccacc
gcgaaggaagccgccaagcggctcgaaaccgtgctgcgcgagccggtcgagaagccgccc
acgggcatggaactgccgcagccgctgggccgcgtcacgctgcgcgacgtgagcttcagc
ttcgccgagacagcgcagcagccggtgctggaaaacgtcgacctcgacatcggccccggc
gggctgcacgtgatcgtcgggcgcaacggcgcgggcaagtcgacgctggtgaagctggtg
tcgggcctgtacacgcccacgcgcggcaccgtgagcatcggcgaatacgacctctcgcag
ttcggccgcgaagagctgtcgcgctggatcagctatctgtcgcaggaggtctattggttc
ggcggcgcgctggtcgacgtgatgcggcgcggcgcgccgggccagagcgacgagcagatc
gtcgcggcctgcaagctctccggcgcgcacgacttcatctcgcgcctgcccgacggctac
cgcaccgtggtgggcgagggcggcaccggcttctccgtcggcgagcggcgcaagctcgcg
ctggccatgagcttccttcgcaagccgtcggtgctggtgctcgacgagcccagcaacgac
ctcgacttccagagcgagcgcaacctgctcgccaccatgctcgcggtggccaaggtgcgc
accgtggtggtggtcacgcactcgctgcgcatcgtttccgcggccacggtggtctatcac
gtgaccgggcagggcaacgtggagcagggctccgcggcggtgatggtgcccaagctgttc
ggcgtgaagaagccgctggtggcggtgggcgacagcgaagacagcgcgggggccgcggcc
acccgctccatggcgtga
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