Variovorax sp. PMC12: C4F17_23550
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Entry
C4F17_23550 CDS
T05380
Name
(GenBank) transcriptional regulator
KO
K14414
transcriptional regulatory protein RtcR
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_23550
Transcription factors [BR:
vam03000
]
Prokaryotic type
Other transcription factors
Others
C4F17_23550
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
Mg_chelatase
AAA
AAA_5
AAA_16
AAA_22
AAA_7
AAA_33
MCM
AAA_14
NACHT
AAA_19
AAA_2
DUF6213
AAA_30
AAA_25
TraC_F_IV
T2SSE
ATPase_2
BrxC_BrxD
TniB
Motif
Other DBs
NCBI-ProteinID:
AVQ83688
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All DBs
Position
1:complement(5048439..5050058)
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AA seq
539 aa
AA seq
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MKPIVVIGFLGTQLDAGQGAGRWNKWRPTVSLAQHEDMVVSRMELLYTLRHKALAELVKA
DIATVSPETTVNLVPIELADPWDFGEVYTRLYDWARGYSFDTEREHYWTHITTGTHVAQI
CMFLLSESRVVPGVLAQTSPPRKQRQGEAGKCTLIDLDLSRYDVIARRFDAEQRDAVAFL
KSGIATRNARFNALIDEIERVAVRSRAPILLVGPTGAGKSFLARRMFELKQARHQMTGPF
VEVNCATLRGDGAASTLFGHKKGSFTGAASDRAGLLRTAHQGALFLDEIGELGLDEQAML
LKAIEEKRFFPVGADKEVESDFQLIAGTNRDLRSDVAEGRFREDLFARINLWTYDLPGLA
QRPEDIEPNVDHLLAIHAAENHRVVRFNAEARTAYLRFAQSGEAVWSGNFRDLSASVTRL
ATLADGGRIPVALVEAEIARLRWLWKHAGAMPMARGADGVDLDALLGEERVQALDLFDRL
QLEAVVRVCRRSRSLSDAGRQLFQASRAQRSVVNDADRLRKYLVKLGLDWGQVSAGPRS
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatcgtcgtcatcggctttctaggcacccagctcgatgccggccagggcgcg
ggccgctggaacaaatggcgccccaccgtttcgctcgcccagcacgaagacatggtcgtc
tcgcgcatggaactgctctacacgctcaggcacaaggcgctggccgagctcgtcaaggca
gacatcgccaccgtgtcgcccgagaccaccgtcaacctcgtgccgatcgagctcgcggac
ccgtgggatttcggcgaggtctatacgcgcctgtacgactgggcgcgcggctacagcttc
gacaccgagcgcgagcactactggacgcacatcaccaccggcacgcacgtcgcgcagatc
tgcatgttcctgctgtcggagtcgcgcgtggtgccgggggtgctcgcgcagacctcgccg
ccccgcaagcagcgccagggcgaggccggcaaatgcacgctgatcgacctcgacctctcg
cgctacgacgtgatcgcgcggcgctttgacgccgagcagcgcgacgcggtcgcgttcctg
aagagcggcatcgccacgcgcaacgcgcgcttcaatgcgctgatcgacgagatcgagcgc
gtggccgtgcgctcgcgtgcgccgatcctgctggtcgggccgaccggcgcgggcaagtcc
ttcctggcgcggcgcatgttcgagctgaaacaagcgcggcaccagatgaccgggccgttc
gtggaagtgaactgcgccacgctgcgcggcgacggcgcggcgtccacgctgttcgggcac
aagaagggctccttcaccggagcggcgagcgaccgcgcgggcctgctgcgtacggcgcac
cagggcgcgctcttcctcgacgagatcggcgagctcggcctcgacgagcaggcgatgctg
ctgaaggcgatcgaggagaagcgcttcttcccggtgggcgccgacaaggaagtggagagc
gatttccagctcatcgccggcaccaaccgcgacctgcgcagcgacgtggccgaaggacgg
ttccgcgaagacctgtttgcgcgcatcaacctctggacctacgaccttcccggccttgcg
cagcggcccgaggacatcgaacccaacgtcgaccacctgctggccatccacgccgccgag
aaccatcgcgtggtgcgcttcaacgccgaagcgcgcacggcctacctgcgtttcgcgcag
agcggcgaggcggtctggagcggcaacttccgcgacctgtcggccagcgtgactcggctg
gccacgctggccgacggcggccgcattcctgtcgcgctggtcgaagcggaaattgcacgg
ctgcgatggctgtggaagcatgcgggcgcgatgcccatggcccgcggtgccgacggcgtg
gatctggatgcgctgctgggcgaagagcgagtgcaggcgctcgacctgttcgaccggctg
caactcgaagccgtggtgcgcgtgtgccgccggtcgcgtagcctttcggatgcggggcgg
cagctgtttcaggcctcgcgcgcgcaacgcagcgtggtgaacgatgcggaccggctgcgc
aagtacctggtcaagctggggctcgattgggggcaggtttccgcggggccgaggagctga
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