Variovorax sp. PMC12: C4F17_23565
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Entry
C4F17_23565 CDS
T05380
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_23565
Enzymes [BR:
vam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C4F17_23565
Transfer RNA biogenesis [BR:
vam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C4F17_23565
Prokaryotic type
tRNA splicing ligases
C4F17_23565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AVQ84778
LinkDB
All DBs
Position
1:5052484..5053701
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AA seq
405 aa
AA seq
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MNYNLHEVENGVPVKMWTRGVPVEPEAQKQLENAARLPIVFKHIAAMPDVHYGIGATVGS
VIPTFKAIIPTAVGVDIGCGMMACKTTLHANDLPDNLGPLRSAIEKAVPHGSNPKRMGRD
KGSWETPPNETDVAWGALKDEFDAICEDYPRLKNTNNHKHLGTLGTGNHFIEVCLDEAGS
VWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDQDLAYFEEGAQYFGDYVRAVGWA
QKFARANREVMMQRVVAAVRKVITKPFEAHVEAVNCHHNYVSRETHFGEDVLVTRKGAVS
AKAGELGIIPGSMGAKSFIVRGKGNPESFMSCSHGAGRKMSRTKAKKLYTVADQVAATEG
VECRKDADVIDEIPMAYKDIDAVMEAQQDLVEVVYTLKQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaactacaacctgcacgaagtcgagaacggcgtgcccgtgaagatgtggacccgcggc
gtgcccgtggagcccgaggcgcagaagcagctggagaacgcagcgcgcctgcccatcgtg
ttcaagcacattgcggccatgcccgacgtgcactacggcatcggcgccaccgtgggttcg
gtgatcccgaccttcaaggccatcattcccaccgcggtgggcgtggacatcggctgcgga
atgatggcgtgcaagaccacgctgcatgccaacgacctgcccgacaacctggggccgctg
cgctcggcgatcgagaaggccgtgccgcacggctcgaaccccaagcgcatgggccgcgac
aagggctcgtgggagacgccgccgaacgaaaccgacgtggcatggggtgcgctgaaggac
gagttcgacgcgatctgcgaagactacccgcgcctgaagaacaccaacaaccacaagcac
ctgggaacgctgggtacgggcaaccacttcatcgaggtgtgcctggacgaggcgggctcc
gtgtggttcatgctgcattcgggttcgcgcggcgtgggtaacgccatcggcacgcacttc
atcgagctcgccaagaaagacgccgagctgcaccagcgcaacctgcccgatcaggacctg
gcgtacttcgaggaaggcgcccagtacttcggcgactatgtgcgcgccgtgggctgggcc
cagaagttcgcgcgcgcgaaccgcgaagtgatgatgcagcgcgtggtagcggccgttcgc
aaggtcatcaccaagcctttcgaggcgcatgtggaagcggtgaactgccaccacaactac
gtgagccgcgaaacgcacttcggtgaagacgtgctcgtcacccgcaagggcgcggtgagc
gcgaaggccggcgagttggggatcatccccggcagcatgggcgccaagagcttcatcgtg
cgcggaaaaggcaaccccgagagcttcatgagctgcagccacggtgccggtcgaaagatg
agccgtaccaaggcgaagaagctctacaccgtggccgaccaagtcgccgcgaccgaaggc
gtggaatgccgaaaagacgccgacgtgatcgacgagatcccgatggcctacaaggacatc
gacgcggtgatggaggcgcagcaggacctggtggaggtggtctacacgctcaagcaggtt
gtttgcgtgaaggggtga
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