Variovorax sp. PMC12: C4F17_23575
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Entry
C4F17_23575 CDS
T05380
Name
(GenBank) MBL fold metallo-hydrolase
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_23575
Enzymes [BR:
vam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
C4F17_23575
Transfer RNA biogenesis [BR:
vam03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
C4F17_23575
Prokaryotic type
C4F17_23575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B
Lactamase_B_4
Motif
Other DBs
NCBI-ProteinID:
AVQ84779
LinkDB
All DBs
Position
1:5054449..5055405
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AA seq
318 aa
AA seq
DB search
MMKLTFLGTSSGTPTRHRNVSGLAVQTVLGPDWFLLDCGEGTQHRVLQTPLSLNDLAAVC
ITHVHGDHCYGLPGLLASAGMNKRTKPLKLIAPLPVWEWFEATRALTDLHLPYEVEHVDI
GGPLLVYEVPGLRIESHALMHRVPSHAYRMQVETRRVRLKADALRAIGLPPGPAWRALQQ
GEDMPFNGGMLRSADYTETQVETVAAVVGGDNAKPALLHDACRGAQLLVHEATFTQEALD
KVGPGPMHSSARLLAEFAQAAEVPNLILTHFSARHQNEEGMAALMAEAQAHYRGHAFLAS
DLDVYELDSAGNVTVTRA
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaactgacttttctgggtacctcctccggtacccccacgcgccaccgcaacgtc
tccggcctcgccgtgcagacggtgctcggcccggactggttcctgctcgactgcggcgag
ggcacgcagcatcgcgtgctgcaaacgccgctgtccctgaacgacctggccgccgtctgc
atcacgcatgtgcacggcgaccactgctacggcctgccgggcctgctcgcgagtgcgggc
atgaacaagcgcacgaagccgctgaagctgattgcgccgctgccggtgtgggagtggttc
gaggcgacgcgcgcgttgaccgatctgcatctgccctacgaagtcgagcatgtggatatc
ggcggaccgctgttggtgtatgaggtgccgggcctgcgcatcgaaagccatgcgctgatg
catcgtgtgcccagccacgcttaccgcatgcaagtcgagacgcggcgcgtgcggctgaaa
gcggacgcattgcgcgccatcggcctgccacccggccccgcatggcgtgcgctgcagcag
ggcgaggacatgcctttcaacggcggcatgctgcgcagcgccgactacaccgagacccag
gtcgaaacggttgccgccgttgtgggcggtgacaacgccaaacccgcgttgctgcacgac
gcctgcaggggcgcgcaactgctggtgcacgaggccaccttcacgcaggaggcactcgac
aaggtcggccccgggccgatgcacagctccgcgcgcctgctggccgagttcgcgcaggcg
gccgaagtgcccaacctgatcctcacgcacttcagcgcgcgccaccagaacgaagagggc
atggctgctttgatggcagaggcgcaggcgcactaccgcggccatgcgttcctggccagc
gacctggatgtctacgagctcgacagtgccggcaacgtgaccgtcacccgggcttga
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