Variovorax sp. PMC12: C4F17_23815
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Entry
C4F17_23815 CDS
T05380
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vam03021
]
C4F17_23815 (rpoH)
Transcription machinery [BR:
vam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C4F17_23815 (rpoH)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AVQ84781
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All DBs
Position
1:complement(5099762..5100703)
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AA seq
313 aa
AA seq
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MTTLSGVSANQLAVANPWSMVPPLGNLDAYISAANRLPLLTLEEEQGFARKLRDHNDLES
AGALVLSHLRLVVSISRQYLGYGLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWI
KAEIHEYILKNWRMVKVATTKAQRKLFFNLRSMKQGFKADSAAADNGTHRDTLSPDEVSQ
MATRLNVKPEEVLEMETRLSGGDVMLDPGPSDDGEEAFGPIAYLADATQEPTALLESQQR
DRLSSDGIATALEALDDRSRRIVEERWLKVNDDGSGGMTLHDLADVYGVSAERIRQIEVA
AMKKMKKALADYA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccctgtccggagtctctgccaaccagctggccgtcgccaacccctggtcgatg
gttcccccgctgggcaacctggatgcttacatttcggccgccaaccgcctgccgctgctc
acgctcgaagaagagcagggcttcgctcgtaaattgcgcgaccacaatgacctcgaatcc
gccggcgcgctcgtgctgtcgcacttgcgcctcgtggtctccatctcccgccaatacctg
ggctacgggctgccgcacggcgacctgatccaggaaggcaacgtcggcctgatgaaggcc
gtgaagcgtttcgaccccgaccagggcgtgcggctcgtgagctacgccatgcactggatc
aaggccgaaatccacgagtacatcctgaagaactggcgcatggtcaaggtcgcgacgacc
aaggctcagcgcaagctgttcttcaacctgcgctcgatgaagcaaggcttcaaggccgac
tcggccgcggccgacaacggcacgcaccgcgacacgctgagccccgacgaggtgtcgcag
atggcgacccggctcaacgtcaagcccgaagaagtgctcgagatggaaacccgcctgtcg
ggcggcgacgtcatgctcgacccgggcccgtcggacgacggcgaagaagccttcgggccc
atcgcctacctggccgacgccacccaggagccgaccgccctgctcgaatcgcagcagcgc
gaccgcctgtcgagcgacggcatcgccacggcgctcgaagcgctggacgaccgcagccgc
cgcatcgtcgaggagcgctggctcaaggtgaacgacgacggctcgggcggcatgacgctg
cacgacctggcggacgtgtatggcgtgagcgccgagcgcattcgccagatcgaagtcgct
gccatgaagaagatgaagaaggccctcgcggactacgcgtaa
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