Variovorax sp. PMC12: C4F17_23960
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Entry
C4F17_23960 CDS
T05380
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_23960
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_23960
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
C4F17_23960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
AVQ83762
LinkDB
All DBs
Position
1:complement(5127268..5128761)
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AA seq
497 aa
AA seq
DB search
MLKRRTLLATGAAALTPLALPTIALAQRKKDALVIGLTLEPTGLDPTAKAGAEIAEVVLY
TVFETLTKINSDGSVTPLLADSWEVSPDLKTYTFKLKRGVKYQNGEPFNAQSVKFSFDRA
AAANSTNKDKRTFTNIATQVVDEHTVVLISKEIEPDLLFLLGQASAILVEPKSVETNATK
PIGTGPYRLDNWAKGSSIVLAKWDGWRGAETVQIRKATFRFISEPAAQTAALLSNDIDLF
PHASVSRSLSQFQNDKRFQIVFNASLGKTILAINNKRKPLDDVRVRRAIAAAIDRKAVID
AAVDGRGIPIGSHYVPGLPGYVDTTGVNPYDIEKAKKLLAEAGVKTPLELELVLPPPPYA
RQGGELIAAQLAKIGIVAKIQNVEWAQWISGTYGNKNYDLSLILHVEPFDLVNYTKPEYY
WGYQSAKFNEVFDKARNAARPADRLRYLGDAQRLLAEDAANVFLFQPQFITIAGRNLRGL
WKDAPIFVNDIAAMSWA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaacgacgcaccctgctcgccaccggcgccgcagccctgacaccgctggccctg
ccgaccatcgcgctggcgcaaagaaaaaaagacgcgctggtgatcggtctcacgctcgag
cccacggggctggaccccacggccaaggccggcgccgaaatcgcggaagtggtgctctac
acggtgttcgaaacgctcaccaagatcaactccgacggcagcgtcacgccgctgctggcc
gacagctgggaagtctcgcccgacctgaagacctacaccttcaagctcaagcgcggcgtg
aagtaccagaacggcgagcccttcaacgcgcagagcgtgaagttctcgttcgaccgcgcg
gccgcggccaacagcaccaacaaggacaagcgcaccttcaccaacatcgcgacgcaggtg
gtcgacgagcacacggtggtgctgatcagcaaggagatcgagcccgacctgctgttcctg
ctgggccaggcttccgccatcctggtcgaaccgaagagcgtggaaaccaacgccacaaag
ccgatcggcacgggcccctacaggctcgacaactgggccaagggctcgagcatcgtgctg
gccaagtgggacggctggcgcggcgccgagacggtgcagatccgcaaggccaccttccgg
ttcatctccgagccggcggcgcagacggccgcgctgctgtcgaacgacatcgacctgttc
ccgcacgcctcggtgtcgcgcagcctgtcgcagttccagaacgacaagcgcttccagatc
gtgttcaacgcctcgctcggcaagaccatcctggccatcaacaacaagcgcaagccgctg
gacgacgtgcgagtgcgccgcgccattgccgcggccatcgaccgcaaggccgtgatcgac
gcggcggtggacggccgcggcattcccatcggcagccactacgtgccgggcctgcccggc
tatgtggacaccaccggcgtgaacccgtacgacatcgagaaggcaaaaaagctgctggcc
gaggccggcgtgaagacgccgctggagctcgaactggtgctgccgcccccgccctatgcg
cgccagggcggcgagctgatcgccgcgcagctggccaagatcggcatcgtcgcgaagatc
cagaacgtcgagtgggcgcagtggatcagcggcacctacggcaacaagaactacgacctc
tccctgatcctgcacgtcgagcccttcgacctggtgaactacaccaagccggagtactac
tggggctaccagtcggcaaagttcaacgaggtgttcgacaaggcccgcaatgcggcgcgc
cccgccgaccgcctgcgctacctcggcgacgcgcagcggctgctggcggaagacgcggcc
aacgtgttcctgttccagcctcagttcatcaccatcgccgggcgcaacctgcgcgggctg
tggaaggacgcgccgatcttcgtgaacgacatcgcggcaatgtcctgggcctga
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