Variovorax sp. PMC12: C4F17_24995
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Entry
C4F17_24995 CDS
T05380
Name
(GenBank) aspartate--tRNA ligase
KO
K01876
aspartyl-tRNA synthetase [EC:
6.1.1.12
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
C4F17_24995
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vam01007
]
C4F17_24995
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_24995
03029 Mitochondrial biogenesis [BR:
vam03029
]
C4F17_24995
Enzymes [BR:
vam01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.12 aspartate---tRNA ligase
C4F17_24995
Amino acid related enzymes [BR:
vam01007
]
Aminoacyl-tRNA synthetase
Class II (A)
C4F17_24995
Transfer RNA biogenesis [BR:
vam03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
C4F17_24995
Prokaryotic type
Other AARSs
C4F17_24995
Mitochondrial biogenesis [BR:
vam03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
C4F17_24995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
GAD
tRNA_anti-codon
tRNA-synt_2b
Motif
Other DBs
NCBI-ProteinID:
AVQ83942
LinkDB
All DBs
Position
1:5334120..5335925
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AA seq
601 aa
AA seq
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MAMRTHYCGLVTEALMGQTVTLCGWVNRRRDHGGVIFVDVRDREGYVQVVCDPDRASTFA
VAENLRNEFCVQITGLVRARPEGTTNDQLKSGKIEVLCHELKVLNPSVTPPFLLDDDNLS
ETTRLTHRVLDLRRPAMQRNMMLRYKVTMETRKFLDANGFIDIETPMLGKSTPEGARDYL
VPSRVHDGSFFALPQSPQLFKQLLMVAGYDRYYQIVKCFRDEDLRADRQPEFTQIDIETS
FLAEEEIREMFEGMIRNVFRNAAGIDLPVFPTMTYADAMFKYGSDKPDLRVKLEFTELTE
LMKRVEFKVFSNAATMAGGRVVALRVPGGGAEGGLSRGEIDAYQEFVKIYGAKGLAYIKV
NDAAAGREGLQSPIVKNLDDNALAEIIARTGARNGDILFFGADKEKIVNDAIGALRIKIG
HSAFGKKSGLFDDRWAPLWVVDFPMFEFDEEGQRWSAVHHPFTAPKDGHEDLMDTAPEKC
IAKAYDMVLNGIEMGGGSVRIHREEVQSKVFRALKISAEDAQLKFGFLLDALQYGAPPHG
GIAIGLDRLVMLMTGAESIRDVIAFPKTQRAQDLLTQAPSPVDEKQLRELHIKLRNAPQA
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggccatgcgtactcactattgcggtctcgtgaccgaagccctgatgggccaaaccgtt
accctgtgcggctgggtcaaccgtcgccgcgaccacggcggcgtgatcttcgtcgacgtg
cgcgaccgcgaaggttatgtgcaggtggtgtgcgaccccgatcgcgcctccaccttcgcc
gtggccgagaacctgcgcaacgagttctgcgtgcagatcaccggcctggtgcgcgcgcgc
cccgagggcacgaccaacgaccagctcaagagcggcaagatcgaagtgctgtgccacgaa
ctgaaggtgctgaacccctcggtcacgcccccgttcctgctggacgacgacaacctgtcg
gaaaccacccgcctcacgcaccgcgtgctcgacctgcgccgcccggccatgcagcgcaac
atgatgctgcgctacaaggtgacgatggagacccgcaagttcctcgacgccaacggcttc
atcgacatcgagacgccgatgctcggcaagtccacgcccgaaggcgcgcgcgactacctc
gtgcccagccgcgtgcatgacggcagcttcttcgcgctgccgcagtcgccccagctgttc
aagcagctgctgatggtggccggctacgaccgctactaccagatcgtgaagtgcttccgc
gacgaagacctgcgcgccgaccgccagcccgaattcacgcagatcgacatcgagacctcc
ttcctcgccgaagaagagatccgcgagatgttcgaaggcatgatccgcaacgtgttccgc
aacgcggcgggcatcgacctgccggtgttcccgaccatgacgtacgcggacgcgatgttc
aagtacggctccgacaagcccgacctgcgcgtgaagctcgaattcaccgaactcaccgag
ctgatgaagcgcgtggaattcaaggtgttctccaacgccgccaccatggccggcggccgc
gtggtcgcgctgcgcgtgcccggcggcggcgccgagggcggcctgtcgcgcggcgagatc
gacgcctaccaggaattcgtcaagatctacggcgccaagggcctggcctacatcaaggtc
aacgacgccgccgccggccgcgaaggcctgcaaagccccatcgtcaagaacctcgacgac
aacgcgctggccgagatcatcgcccgcacgggtgcgcgcaacggcgacatcctgttcttc
ggcgccgacaaggaaaagatcgtcaacgacgccatcggcgcgctgcgcatcaagatcggc
cacagcgccttcggcaagaagagcggcctgttcgacgaccgctgggcaccgctgtgggtg
gtcgacttcccgatgttcgagttcgacgaggaaggccagcgctggagcgccgtgcaccat
ccgttcaccgcgccgaaggacggccatgaagacctcatggacaccgcccccgagaagtgc
atcgccaaggcctacgacatggtgctcaacggcatcgagatgggcggcggttcggtgcgt
atccaccgcgaggaagtgcagagcaaggtgttccgcgcgctgaagatcagcgccgaggac
gcgcagctcaagttcggcttcctgctggacgcgctgcagtacggcgccccgccgcacggc
ggcatcgccatcggcctggaccgcctggtcatgctgatgaccggcgccgagtcgatccgc
gacgtgatcgccttccccaagacccagcgcgcacaggacctgctgacgcaggcgccgagc
ccggtcgacgagaagcagctgcgcgagctgcacatcaagctgcgcaacgccccccaagct
gcctga
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