Variovorax sp. PMC12: C4F17_25345
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Entry
C4F17_25345 CDS
T05380
Name
(GenBank) L-seryl-tRNA(Sec) selenium transferase
KO
K01042
L-seryl-tRNA(Ser) seleniumtransferase [EC:
2.9.1.1
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00450
Selenocompound metabolism
vam00970
Aminoacyl-tRNA biosynthesis
vam01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
C4F17_25345
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
C4F17_25345
Enzymes [BR:
vam01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.1 L-seryl-tRNASec selenium transferase
C4F17_25345
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GFIT
Motif
Pfam:
SelA
Se-cys_synth_N
Beta_elim_lyase
Cys_Met_Meta_PP
Aminotran_5
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
AVQ84004
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Position
1:complement(5406767..5408215)
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AA seq
482 aa
AA seq
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MAAPKESVVHGSTARPQDLPSVDQLLRLAVPGALLAEHGRTLVVKEARALLEGLRARAVA
GKLAATDIEQEALGNALAARVRARLAPRMRAVLNLTGTVIHTNLGRALLADAALQRLLAV
MTSPNNLEYDLATGSRGDRDSLVEELLCSITGAQAATVVNNNAAAVLLTIAALAREREVI
VSRGELVEIGGAFRMPDVMASAGARMVEVGTTNRTHPQDYERAINAHTALVMKVHTSNYA
VQGFTAAVDEATLAGIAHARGVPLATDLGSGSLIDLAHYGLPREPLPQEMLAAGCDVVTF
SGDKLLGGPQTGLIVGSREAVGRIRKFPMKRALRMSKLPLAALEATLSLYLRPERLAQDL
PTLRLLTRPADAIREMAERLKAPVQAAVSPRFTVEVVPLLGQIGSGSLPVERLPSAGLAL
APAGTSKKGTGTALDALATALRGLPLPVIGRIAEDRLLLDLRCLEDSAEFVAQLALLRER
LQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgccgaaagagtccgtggtccacggctcgacggcaaggccccaggatcttcct
tctgtcgatcaactgctgcgtctcgccgtgccgggcgcgttgctggccgagcacggccgc
acgctggtggtgaaggaagcgcgcgcgctgctcgaggggcttcgcgcgcgggccgtggcg
ggcaagctggcggctaccgacatcgagcaagaggcgctaggcaacgcactcgccgcgcgc
gtccgggcccgcctcgcgccgcgcatgcgcgcggtgctgaacctcaccggcaccgtcatc
cacaccaacctaggccgcgcgctgctggccgacgcggcgctgcagcgactgctcgcggtg
atgacatcgcccaacaacctcgagtacgacctcgccaccggcagccgcggcgaccgcgac
tcgctggtcgaagaactgctttgcagcatcaccggcgcccaagccgccacggtggtcaac
aacaacgcggccgccgtgctgctgaccatcgcggccctggcgcgcgagcgcgaggtgatc
gtctcgcgcggcgaactggtggaaatcggcggcgccttccgcatgcccgacgtgatggcc
agcgcgggcgcgcgcatggtcgaggtcggcaccaccaaccgcacgcatccgcaggactac
gagcgcgccatcaacgcgcacaccgcgctggtgatgaaggtgcacaccagcaactacgcc
gtgcagggcttcaccgccgcggtcgacgaagccacgctcgccggcatcgcgcacgcgcgc
ggcgtgccgctggccaccgacctgggcagcggctcgctgatcgacctggcccactacggc
ctgccgcgagagccgctgccgcaggagatgcttgcggccggctgcgacgtggtcaccttc
tcgggcgacaagctgctgggcggtccgcagaccggcctcatcgtcggcagcagggaggct
gtcggccgcatccgcaagttcccgatgaagcgcgcgctgcgcatgagcaagctgccgctg
gcggcgctggaagccacgctgtcgctgtacctgcggcccgagcgcctcgcgcaagacctg
ccgacgctgcggctgctcacgcggcccgcggatgcgatccgcgaaatggcagagcgcttg
aaggcaccggtgcaagcggccgtgtcgccgcgcttcaccgtcgaggtcgttccgctgctc
gggcagatcggctcgggctcgctgccggtcgagcggctgccctcggccgggctcgcgctc
gcgccggccggcacgtcgaagaagggcacgggcaccgcgctcgatgccctcgccaccgcg
ctgcgcggcctgcccctgccggtgatcggccgcatcgccgaagaccggctgctgctcgac
ctgcgctgcctggaggacagcgccgaattcgtcgcgcaattggcgctgctgcgcgagcga
ctgcaatga
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