Variovorax sp. PMC12: C4F17_25550
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Entry
C4F17_25550 CDS
T05380
Name
(GenBank) serine--tRNA ligase
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
C4F17_25550
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vam01007
]
C4F17_25550
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_25550
Enzymes [BR:
vam01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
C4F17_25550
Amino acid related enzymes [BR:
vam01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
C4F17_25550
Transfer RNA biogenesis [BR:
vam03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
C4F17_25550
Prokaryotic type
C4F17_25550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
CEP63
DUF7310
DUF7491
DUF3450
DUF16
HAUS-augmin3
Phage_GP20
TMF_TATA_bd
PRKG1_interact
WXG100
FapA
Motif
Other DBs
NCBI-ProteinID:
AVQ84045
LinkDB
All DBs
Position
1:5446072..5447403
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AA seq
443 aa
AA seq
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MLDITLLRKDLASAVAGLEKRKKNQPYLDVSAFTTLEAERKTLQTRTEEIQARRNSLNKQ
IGPLKAKGESVDALMAEVNALKAEQESQSRRLEEIQPELQALLLAVPNLPHASVPLGEDE
SGNVEMRRWAPQGGAGANAKPLGFAARDHVDLGAPLGLDFEMGAKLAGSRFTVMKGPIAR
LHRALAQFMLDMQTEKHGYTECYVPYIVNAATLSGTGQLPKFEGDLFAAKKGGQDGEPAP
DHSALYLIPTSEVPLTNFVRDEVVAESQLPIKVTAHTPCFRSEAGSAGRDTRGMIRQHQF
DKVEMVQIVHPEKSYDALEEMTGHAEAVLQALELPYRVVLLCTGDMGFGSTKTYDLEVWL
PAQDTYREISSVSNCEAFQARRLQARFKNAQGKNELVHTLNGSGLAVGRALVAVLENHQN
EDGSINVPAALRPYIGGAEVLRA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacatcaccctgctccgcaaagacctggcctccgccgtggccggccttgaaaaa
cgcaagaaaaaccagccttacctcgacgtgtcggcgttcaccacgctcgaggccgagcgc
aagacgctgcaaacccgcaccgaggaaatccaggcgcgccgcaattcgctgaacaagcag
atcggcccgctcaaggccaagggcgagtcggtggatgcgctgatggccgaagtcaacgcg
ctcaaggccgagcaggaatcgcagtccagacgcctcgaagaaatccagcccgagctgcag
gccctgctgctcgccgtgcccaacctgccgcacgccagcgtgccgctgggcgaagacgag
agcggcaacgtcgaaatgcgccgctgggccccgcagggcggcgccggcgccaacgccaag
ccgctgggctttgccgccagagaccatgtcgacctgggtgcgccgctgggcctcgatttc
gagatgggcgccaagctcgcgggctcgcgcttcaccgtgatgaagggcccgatcgcccgc
ctgcaccgcgcgcttgcgcagttcatgctcgacatgcagaccgagaagcacggctacacc
gagtgctacgtgccctacatcgtcaatgccgccacgctcagcggcaccggccagttgccc
aagttcgagggcgacctgttcgccgcgaagaagggcggccaggacggcgagccggcgccc
gaccattcggcgctgtacctcattcccaccagcgaagtgccgctgaccaacttcgtgcgc
gacgaggtggtggccgagtcgcaactgccgatcaaggtcacggcccacacgccgtgcttc
cgctccgaagccggcagcgccggccgcgacacgcgcggcatgatccgccagcaccagttc
gacaaggtcgagatggtgcagatcgtgcacccagaaaagagctacgacgcgctcgaagag
atgacggggcacgccgaagccgtgctgcaggccttggagctgccgtaccgtgtggtgctg
ttgtgcacgggtgacatgggcttcggctccaccaagacctacgacctcgaggtttggctg
ccggcgcaggacacctaccgcgagatcagttcggtctccaactgcgaagccttccaggca
cggcgcctgcaggcccgcttcaagaacgcgcagggcaagaacgaactcgtgcacacgctc
aacggctccggccttgccgtgggacgcgcgctggtggccgtgttggagaaccatcagaac
gaagacggctcgatcaacgtgccggccgcgttgcggccgtacatcggcggcgccgaagtt
ttgcgcgcctga
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