Variovorax sp. PMC12: C4F17_25645
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Entry
C4F17_25645 CDS
T05380
Name
(GenBank) hypothetical protein
KO
K03406
methyl-accepting chemotaxis protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02020
Two-component system
vam02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C4F17_25645
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
C4F17_25645
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vam02035
]
C4F17_25645
Bacterial motility proteins [BR:
vam02035
]
Flagellar system
Chemotaxis proteins
MCPs
C4F17_25645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCPsignal
4HB_MCP_1
TarH
HAMP
IFT57
COG6_N
Spectrin_SYNE1
ATG16
DUF1664
ApoLp-III
zf-C4H2
Motif
Other DBs
NCBI-ProteinID:
AVQ84059
LinkDB
All DBs
Position
1:5462536..5464101
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AA seq
521 aa
AA seq
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MSLKDLKIGTRLGLGFAVMLLLMAFIAGTGVLRLTNVGHATDEMVEKALVKERLANEWLS
NLRSNTVANFAMVKTTDPAIAAYFSKLQAAGSARISPAQKKLESMLDTPEEKALYARVSA
SRAVVLETVGVLNKLKDSGQLAEANTLVDTKFSEALGVYGGAVEALAQHQREKIDAAAKR
IGADYMAGRTTLIVLACIAVVLGALFAWRLSVGIVRPLGHALEVAETVAAGDLSADIRVE
SRDEAGQLMQALKNMNESLAKVVGEVRTGTETIATASGQIASGNQDLSSRTEQQASSLEQ
TAASMEELTSTVKQNADNARQANQLAVSASEVAVKGGSVVSQVVDTMGSINASSKKIVDI
IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIGDS
VEKVEEGSKQVAEAGRTMEEIVGSVKRVTDIMGEITAASQEQTSGIEQINQAITQMDQVT
QQNAALVEEASAAAQSLQEQAGSLSQVVGVFQLGRNQLALA
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgaaggatctgaaaatcggcacgcgcctggggctcggcttcgcggtgatgctg
ctgctgatggctttcattgccggcaccggcgtgctgcggctgaccaatgtgggccatgcc
accgacgagatggtggagaaggcgctggtgaaggagcgcctggccaacgaatggctgagc
aacctcaggtcgaacacggtggccaacttcgcgatggtcaagaccaccgatcccgccatt
gccgcctacttctccaagctgcaggcggccggctcggcacgcatcagcccggcgcagaag
aagctcgaatcgatgctggacacgccggaggagaaggcgctgtatgccagggtgtcggcc
tcgcgcgccgtggtgctcgagacggtgggcgtgctcaacaagctcaaggacagcggccag
ctcgccgaagcgaacacgctggtcgacaccaagttcagcgaagcgctgggcgtgtatggc
ggcgccgtcgaggcgctggcccagcaccagcgcgagaagatcgatgccgccgccaagcgc
atcggtgccgactacatggcgggccgcaccacgctgatcgtgctggcgtgcatcgccgtc
gtgctcggcgcgctgttcgcctggcgcctgagcgtgggcatcgtgcgcccgctgggccac
gcgctggaagtggccgagaccgtggcggccggcgacctgagcgccgacattcgcgtggaa
agccgcgacgaggcgggccagttgatgcaggcgctcaagaacatgaacgagagcctggcc
aaggtggtgggcgaagtgcgtaccggcacggagacgatcgcgacggcttcggggcagatc
gcctcgggcaaccaggacctgtcttcgcgcacggaacagcaggccagttcgctggagcag
acggctgcttcgatggaagagctgacttcgaccgtgaaacagaacgcggacaacgcacgt
caggccaaccagctggctgtgtctgcttcggaagttgccgtgaagggcggcagcgtcgtg
tcgcaagtggtcgacaccatgggctcgatcaatgcgtcgtccaagaagatcgtcgacatc
atcggcgtgatcgacggcatcgcattccagaccaacatcctggcgctgaatgcggctgtg
gaagcggcccgtgcgggtgagcagggccgcggctttgcggtggtggcatcggaagtgcgc
agcctcgcacagcgctcggcagcagcagccaaggagatcaagacgctgatcggcgactcc
gtggagaaggtcgaggaaggcagcaagcaggtcgccgaggcgggccgcacgatggaagaa
atcgtcggcagcgtgaagcgcgtgacggacatcatgggcgagatcaccgcagcgagccag
gagcagacctccggcatcgagcagatcaaccaggccatcacgcagatggaccaagtgacg
cagcagaacgccgcgctggtcgaagaggcctcggccgccgcccagtcgctgcaggagcag
gcaggcagcctgtcgcaagtcgtcggcgtgttccagctcggccgcaatcaactggccctg
gcctga
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