Variovorax sp. PMC12: C4F17_25660
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Entry
C4F17_25660 CDS
T05380
Name
(GenBank) HAMP domain-containing protein
KO
K03406
methyl-accepting chemotaxis protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02020
Two-component system
vam02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C4F17_25660
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
C4F17_25660
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vam02035
]
C4F17_25660
Bacterial motility proteins [BR:
vam02035
]
Flagellar system
Chemotaxis proteins
MCPs
C4F17_25660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCPsignal
HAMP
4HB_MCP_1
TarH
COG6_N
IFT57
Spectrin_SYNE1
DUF4231
Motif
Other DBs
NCBI-ProteinID:
AVQ84062
LinkDB
All DBs
Position
1:5466304..5467896
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AA seq
530 aa
AA seq
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MNFFSNLRIGTRLAAAFAVVLGLVVLSTAFALFSARSNAEATRVMMESPLAKERLIADWY
VLTYSAIARTSMIARTTDESLPVVFADVISDSVKKGSQTIAKVEKLLVTDEEKATFKSII
ELRAKYQAAKEEVGKAKAGGDTVETARVFKESFQPAAKAYENRVLELLSIERKAIDDMSA
RIDAANTRSFNLRLFLTLATVVIGAILAFLISRSIVRPLARAVEVAETVAAGDLSVDIRV
ESRDETGQLMQALKNMNESLAKVVGEVRTGTETIATASGQIASGNQDLSSRTEHQASSLQ
QTAASMEELTSTVKQNADNARQANQLAVSASEVAVKGGSVVSQVVDTMGSINASSKKIVD
IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIGD
SVEKVEEGSKQVEEAGRTMDEIVGSVKRVTDIMGEITAASQEQTSGIEQINQAITQMDQV
TQQNAALVEEASAAAQSLQEQASSLSQVVGVFRLEGSRAAVPAHRLALTA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcttctcgaacctgcgcatcggcacgcggcttgccgcggcctttgccgtcgtc
ctcggactggtggtgctttccaccgccttcgcgcttttctccgcgcgcagcaacgcggaa
gccacgcgggtgatgatggaaagcccgctggcgaaggagcggctgattgccgactggtat
gtgctgacctactcggccatcgcacgcacgtcgatgatcgcgcgcaccaccgacgagagc
ttgccggtcgtcttcgccgacgtcatttccgacagcgtgaaaaaggggtcgcagaccatc
gccaaggtcgagaagctgctggtgaccgacgaggagaaggccaccttcaagtcgatcatc
gagctgcgcgccaagtaccaggcggccaaggaggaagtgggcaaggccaaggcgggcggc
gacacggtggaaaccgcgcgcgtcttcaaggaaagcttccagcccgcggccaaggcctat
gaaaaccgggtgctcgaactgctgtcgatcgagcgcaaggccatcgacgacatgagcgcc
aggatcgacgcggcgaatacgcgcagcttcaacctgcggctgttcctgacgctggcgacc
gtggtgatcggcgcgatcctcgcgttccttatctcgcgcagcatcgtgcggccgttggcg
cgcgccgtcgaggtggctgaaaccgtcgcggccggcgacctgagcgtcgacattcgcgtg
gaaagccgcgacgagacgggccaactgatgcaggcgctcaagaacatgaacgagagcctg
gccaaggtggtgggcgaagtgcgtaccggcacggagacgatcgcgacggcttcggggcag
atcgcctcgggcaaccaggacctgtcttcgcgtacggagcatcaagcgagttcgctgcag
cagacggctgcttccatggaagagctgacttcgacggtgaagcagaacgcagacaacgca
cggcaggctaaccagctggctgtgtcggcttcggaagtcgcggtgaagggcggcagtgtc
gtctcgcaggtggtcgacacgatgggctcgatcaacgcgtcgtccaagaagatcgtcgac
atcatcggcgtgatcgacggcatcgcgttccagaccaacatcctggcgctgaacgcggcg
gtggaagccgcccgcgcgggcgaacaaggtcgaggctttgcggtcgtcgcttccgaagtc
cgcagcctcgcgcagcgctcggcagcggcagccaaggaaatcaagaccctcatcggcgac
tcggtggagaaggtcgaagagggcagcaagcaggtggaagaagccgggcgcaccatggac
gagatcgtcggcagcgtgaagcgcgtgacggacatcatgggcgagatcaccgctgcaagc
caggagcagacctcgggcatcgagcagatcaaccaggccatcacgcagatggaccaggtc
acacaacagaacgcggcgctggtcgaagaggcttcggcggcagctcaatcgctgcaggag
caggcaagcagcctgtcgcaggtggtcggcgtgtttcgcctggaaggcagccgcgctgcc
gtcccggcgcatcggctggcactcactgcataa
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