KEGG   Variovorax sp. PMC12: C4F17_25875
Entry
C4F17_25875       CDS       T05380                                 
Name
(GenBank) RNA polymerase sigma factor FliA
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vam  Variovorax sp. PMC12
Pathway
vam02020  Two-component system
vam02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:vam00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C4F17_25875
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    C4F17_25875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vam03021]
    C4F17_25875
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vam02035]
    C4F17_25875
Transcription machinery [BR:vam03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C4F17_25875
Bacterial motility proteins [BR:vam02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    C4F17_25875
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r4_2 UPF0122 MarR_2
Other DBs
NCBI-ProteinID: AVQ84103
UniProt: A0A2P1VG01
LinkDB
Position
1:5513220..5513954
AA seq 244 aa
MYTAQGTIEKSHLLAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNR
GAQFETFVSQRIRGAMLDELRASDWGSRGLRQSARGIEKAIHALGHRLGRAPSEGEIAKE
LKMDLEAYQSMLQEIHGCQLLYVEDFAKDDPDNPFLDIHSQDARRDRRSGDDPLEQLLES
GFRHQLVDAISALPERDQLLLNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLRAKL
KDLL
NT seq 735 nt   +upstreamnt  +downstreamnt
gtgtacaccgcacagggaaccatcgagaaatcgcacctgctggcgcagcatcagccgctg
gtgcgccgcatcgcattgcagatgatggccaagctgcccgccagcgtggagctggacgac
ctgatccaggccggcatgctgggcctgctggatgcgtccagccgctaccaggacaaccgt
ggggcgcagttcgagaccttcgtcagccagcgcatccgcggcgccatgctcgacgaactg
cgcgccagcgactggggctcgcgcggcctgcgccagtcggcccgtggcatcgagaaggcc
attcatgcgctcggccaccggctcgggcgcgcgccgagcgaaggcgagatcgccaaggaa
ctgaagatggacctggaggcctaccagtccatgctgcaggagatacatggctgccagctg
ctctacgtggaggacttcgcgaaggacgacccggacaacccgttcctggacatccactcg
caggacgcgcgccgcgaccggcgcagtggtgatgacccgctggagcaattgctggagagc
ggcttccgccaccagctggtggatgccatttcggcgctgcccgagcgcgaccagttgctg
ctcaacctctactacgaggaagaactgaacctgcgcgagatcggcgccatcctggaagtg
agccagtcgcgcgtgtgccagctgcacagccaggcgatcagcaggctgcgcgcgaagctc
aaggacctgctctga

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