Variovorax sp. PMC12: C4F17_25875
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Entry
C4F17_25875 CDS
T05380
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
vam
Variovorax sp. PMC12
Pathway
vam02020
Two-component system
vam02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C4F17_25875
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C4F17_25875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vam03021
]
C4F17_25875
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vam02035
]
C4F17_25875
Transcription machinery [BR:
vam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C4F17_25875
Bacterial motility proteins [BR:
vam02035
]
Flagellar system
Flagellar assembly proteins
Stator
C4F17_25875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AVQ84103
UniProt:
A0A2P1VG01
LinkDB
All DBs
Position
1:5513220..5513954
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AA seq
244 aa
AA seq
DB search
MYTAQGTIEKSHLLAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNR
GAQFETFVSQRIRGAMLDELRASDWGSRGLRQSARGIEKAIHALGHRLGRAPSEGEIAKE
LKMDLEAYQSMLQEIHGCQLLYVEDFAKDDPDNPFLDIHSQDARRDRRSGDDPLEQLLES
GFRHQLVDAISALPERDQLLLNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLRAKL
KDLL
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgtacaccgcacagggaaccatcgagaaatcgcacctgctggcgcagcatcagccgctg
gtgcgccgcatcgcattgcagatgatggccaagctgcccgccagcgtggagctggacgac
ctgatccaggccggcatgctgggcctgctggatgcgtccagccgctaccaggacaaccgt
ggggcgcagttcgagaccttcgtcagccagcgcatccgcggcgccatgctcgacgaactg
cgcgccagcgactggggctcgcgcggcctgcgccagtcggcccgtggcatcgagaaggcc
attcatgcgctcggccaccggctcgggcgcgcgccgagcgaaggcgagatcgccaaggaa
ctgaagatggacctggaggcctaccagtccatgctgcaggagatacatggctgccagctg
ctctacgtggaggacttcgcgaaggacgacccggacaacccgttcctggacatccactcg
caggacgcgcgccgcgaccggcgcagtggtgatgacccgctggagcaattgctggagagc
ggcttccgccaccagctggtggatgccatttcggcgctgcccgagcgcgaccagttgctg
ctcaacctctactacgaggaagaactgaacctgcgcgagatcggcgccatcctggaagtg
agccagtcgcgcgtgtgccagctgcacagccaggcgatcagcaggctgcgcgcgaagctc
aaggacctgctctga
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