Variovorax sp. PMC12: C4F17_25940
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Entry
C4F17_25940 CDS
T05380
Name
(GenBank) tryptophan--tRNA ligase
KO
K01867
tryptophanyl-tRNA synthetase [EC:
6.1.1.2
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
C4F17_25940
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vam01007
]
C4F17_25940
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_25940
Enzymes [BR:
vam01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.2 tryptophan---tRNA ligase
C4F17_25940
Amino acid related enzymes [BR:
vam01007
]
Aminoacyl-tRNA synthetase
Class I (G)
C4F17_25940
Transfer RNA biogenesis [BR:
vam03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
C4F17_25940
Prokaryotic type
C4F17_25940
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1b
tRNA-synt_1f
DUF1508
Motif
Other DBs
NCBI-ProteinID:
AVQ84115
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Position
1:complement(5526834..5528165)
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AA seq
443 aa
AA seq
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MSPSSKAPLRVLTGITPSGTPHLGNYVGSIRHSVRQSVAPGVQSFFFLADYHALIKVQEP
AKIQRSTLEIAASWLACGLDPEHVTFYRQSDIPEIPELTWFLTCVTGKGVLNRAHAYKAQ
IDKNTAKGEDPDADVTAGLFMYPVLMGADILMFNAHKVPVGRDQVQHIEMARDMAQRFNH
LYGEHFTLPDAEIDDAVATLPGLDGRKMSKSYNNTIPLFAPRAYLRKQITSIVTDSRAPG
EPKDTEGSALFQIYQAFADADETEMLRKAYADGIGWGDAKQLLFERIDLEVAPLRERYDA
LMNNPAEIERQLLIGAEKARALSKPFMVELRHAVGLRNLAAGKDKAGAKAAKVAKPSFKQ
YREKADGLFYFKLLDARGETLLQSRGFASPQEAGRTIAALQEQRGAALTALAGQLEPIDT
EGTRAVTEALEALAEATPNNQGS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtccccgtcttccaaagctcccctgcgcgtcctgaccggcatcaccccgtcgggcacg
ccccacctcggcaactacgtcggctcgatccgccattcggtgcggcaaagcgtcgcgccc
ggtgtgcagagcttcttcttcctggccgactaccacgcgctcatcaaggtgcaggagccg
gcaaagatccagcgctccaccctcgagatcgccgccagctggctggcctgcggcctcgac
ccggagcacgtcaccttctaccgccagtccgacattcccgagattcccgagctcacctgg
ttcctcacctgcgtcaccggcaagggcgtgctcaaccgcgcgcatgcctacaaggcgcag
atcgacaagaacaccgccaagggtgaagaccccgacgccgacgtgacggccggcctattc
atgtacccggtgctcatgggcgcggacatcctgatgttcaacgcccacaaggtgccggtg
ggccgcgaccaggtgcagcacatcgagatggcgcgcgacatggcgcagcgcttcaatcac
ctgtacggcgagcatttcacgctgcccgacgccgagatcgacgatgccgtcgccaccttg
cccggcctggacggccgcaagatgagcaagagctacaacaacacgatcccgctgttcgcg
ccgcgcgcgtacctgcgcaagcagatcaccagcatcgtgaccgactcgcgcgcgcccggc
gagcccaaggacaccgaaggctccgcgctgttccagatctaccaggcctttgccgacgcc
gacgagaccgagatgctccgcaaggcctatgccgacggcatcggctggggcgatgcgaag
cagctgctgttcgagcgcatcgacctcgaagtggcgccgctgcgcgagcgctacgacgcg
ctcatgaacaacccggccgagatcgagcgccagctgctcatcggtgccgagaaggcccgc
gcgctgtcgaagcccttcatggtggagctgcgccatgcggtcggcctgcgcaatctcgcg
gccggcaaggacaaggccggcgccaaggcggccaaggtcgcgaagcccagcttcaagcaa
taccgcgagaaggccgacggcctcttctatttcaagctgctcgatgcgcgcggcgaaacc
ctgctccagagccgtggattcgcgtcgccgcaggaagccggccgtaccatcgcggccttg
caggagcagcgcggcgcggcattgaccgcgctggccgggcagcttgaacccatcgacacg
gaaggaacacgcgccgtcaccgaggcgctggaggcactggccgaggcaacgcccaacaac
cagggaagttga
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