Variovorax sp. PMC12: C4F17_26195
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Entry
C4F17_26195 CDS
T05380
Name
(GenBank) autotransporter outer membrane beta-barrel domain-containing protein
Organism
vam
Variovorax sp. PMC12
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Paralog
GFIT
Motif
Pfam:
Autotransporter
AC_1
ESPR
Motif
Other DBs
NCBI-ProteinID:
AVQ84162
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All DBs
Position
1:complement(5586180..5589299)
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AA seq
1039 aa
AA seq
DB search
MNKIFRTLWNPTLGTWVAAPETSRGHSRSSAKGGDLRAVAVAAALLLGAGPVLAAGGTGG
QPVGDPTLNAGSGGSNGSGGNGGLNDTTINATGGTGGSSTPSGVTAGSAASTTNFPGGAT
AGAGGAAGNGSTVVSPGVIQGADGGAGQAQTGDANNGNGYGGGGGGGFQGATIGNNVGTT
SNSYTGGNGGAGGNGYWAAGGGGAGGYGSILNGPLGSYTATGSSTGGAGGAGGNAFSQAG
GGGSGGVGFYLNATTPGLAFGNTGTIAGGVGGAGGSELATPRPNASGGGGGAGGDGVTLA
GSTVLMTNTGQITGGAGGAGGAAGGGAGGTGTPGGGGDGGAGVWSSGSGATLTNSGSITG
GAGGAGGANSNGGAIGANGVGGVGVAGANIAIVNSGSIAGGLGGDGVTRASAIEFTGGAN
SLTLNTGNSLTGAVAIDSGATASVIAGANGLSVGSALLLGGTGTINTNGNNLSWTGPISG
ASGLVKSGAGTLTLSGANTYAGSTNVSAGTLAAGAANTFSSASAFTVGSGATLDLAGRSQ
TVASVANSGTVSLVGSAPGTTLTVTGPWVGNGGTLRLGTALGGNSSATDRLILSGSTAIA
SGTTNVQITNLGGLGALTSGNGIEVISAVNGATTTAQTTKSAFNLAGGHVDAGAYQYRLY
AADASGAGENWYLRSTMTVDPVTGAPVTGGGTGSTGGGTGGGTGGGTGGGVLVPTYRAEV
PLYAALPEQLRQSNLAMLSNLHQRVGDDTGTGLSGTNTATPEMGYRQAWGRIISTDRTIG
QSGTVSPNSSGRLTGFQAGTDLWADPNWRVGVYVGQLEGDMRVNGFVGGLQNAAAGTNNL
RSEYLGAYATWKNDSGLYVDGVLQAGRHRYTASPTLGFSSSGKGNSLLASVEVGQSFAIA
DGWVIEPQLQLVRQRLNLGDTGISGALVQQNNHDGWLARAGVRLKGEIDTSAGRLQPYVR
VNVYRSSSGTDVANFIGPAGSTPIATRTGGTSSELATGATLQLTQSTSLYAELGKLWSSG
GDTRVRSGINGSVGVKIRW
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagattttccgcaccctctggaatccaacgctcggtacctgggtggccgcgcct
gaaacttcgcgcggccattcacggtcgtccgccaagggcggcgacctgcgcgccgtggcc
gtggccgccgcactgctcctcggagcggggccggtgctggccgcgggcggcactggcggc
cagcctgtcggcgacccgacgctgaacgccggctccggcggcagcaacggcagcggcggc
aacggcggcctgaacgacaccacgatcaacgcgaccgggggcaccggcggctcgtcaacg
ccctccggcgtcacggccggctcggccgccagcaccaccaacttccccggcggtgccacg
gcgggcgcgggcggcgcggcgggcaacggcagcacggtcgtcagccccggcgtaatacag
ggagcggacggcggcgccggccaggcccagacaggcgacgccaacaacggaaacggctac
ggcgggggcggcggcggcggcttccagggcgcgacgatcggcaacaacgtcggcaccacg
tccaacagctacaccggcggcaacggcggagcgggcggcaacggttactgggcggccggc
ggcggcggcgcgggcggctacggctccatcctcaacggcccgctcggcagctacacggcc
accggctcgtcgacgggtggtgcaggcggcgcgggcggcaatgcgttctcgcaggccggc
ggcggcggcagcggcggcgtcggcttctacctgaacgccaccacgccggggctcgcgttc
ggcaacaccggcaccatcgccggcggcgtgggcggcgccggcggctccgaactggcgacg
ccgcgccccaacgcctcgggcggcggcggcggggccggcggcgacggcgtcacgctcgcg
ggcagcaccgtgctgatgaccaacaccggccagatcaccggtggcgcgggtggcgccggc
ggtgcggccggcggcggcgctggcggcaccggcacgccgggcggcggcggcgacggcggc
gccggcgtgtggtcctccggcagcggcgcaaccctcaccaacagcggcagcatcaccggc
ggcgccggtggcgcgggcggcgccaacagcaacggcggcgcgatcggcgccaacggcgtg
ggcggcgtgggcgtggcgggcgcgaacatcgccatcgtcaacagcggcagcatcgcgggc
ggtctgggcggcgacggcgtgacgcgcgcttcggccatcgaattcaccggcggcgccaac
agcctgaccttgaacaccggcaactcgctgacgggcgccgtggccatcgacagcggcgcc
accgccagcgtgatcgccggcgccaacggcctgagcgtgggcagcgccctgctgctcggc
ggcaccggcaccatcaacaccaacggcaacaacctgagctggaccggccccatctcgggc
gccagcggcctcgtgaagagcggcgcgggcacgctgacgctgagcggcgccaacacgtac
gccggcagcaccaacgtatcggcgggcacgctggccgccggcgcggccaacaccttcagc
agcgccagcgccttcacggtcggctcgggcgccacgctggacctggcgggccgcagccag
acggtggcctcggtggccaacagcggcacggtctccctggtgggcagcgcgcccggcacc
acgctcaccgtcaccggcccgtgggtgggcaacggcggcacgctgcggctgggcacggcg
ctgggcggcaacagcagcgcgaccgaccggctgatcctcagcggcagcaccgccattgcc
agcggcaccaccaacgtgcagatcaccaacctgggcggcctgggcgcgctcaccagcggc
aacggcatcgaggtgatcagcgccgtgaacggcgcgacgaccaccgcgcagaccaccaag
agcgccttcaacctcgcgggcggccatgtggacgccggcgcctaccagtaccgcctgtac
gcggccgacgccagcggcgcgggtgagaactggtatctgcgctcgaccatgaccgtcgat
ccggtcacgggcgcgcccgtcacgggcggcggaaccggcagcacgggcggcggcaccgga
ggtggcactgggggcggcactgggggtggcgtgctcgtacccacctaccgcgccgaagta
ccgctgtacgcggcgctgccggagcagctgcgccagtccaacctcgcgatgctgtccaac
ctgcaccagcgcgtgggtgacgacaccggcaccggcctttcgggcaccaacaccgccacg
cccgagatgggctaccggcaggcctggggccgcatcatcagcaccgaccgcaccatcggc
cagagcggcacggtcagccccaacagcagcgggcgcctcacgggcttccaggccggtacc
gacctgtgggccgacccgaactggcgcgtgggcgtgtacgtcggccagctcgagggcgac
atgcgcgtgaacggcttcgtcggcggactgcagaacgcagcggccggcaccaacaacctg
cgcagcgaatacctgggcgcctatgccacctggaagaacgacagcggcctgtacgtggac
ggcgtgctgcaggccgggcgccaccgctacaccgcttcgcccacgctgggcttctcgagc
agcggcaagggcaacagcctgctggcgtccgtggaagtgggccagtccttcgccatcgcg
gacggctgggtcatcgagccgcagctgcagctggtgcgccagcggctcaacctgggcgac
accggcatcagcggcgcgctggtgcagcagaacaaccacgacggctggctcgcgcgtgcg
ggcgtgcggctcaagggcgagatcgacacgtccgccggccggctgcagccttatgtccgg
gtgaacgtgtaccgcagcagcagcggcaccgacgtggcgaacttcatcggcccggccggc
agcacgcccatcgccacgcgcaccggcggcaccagcagcgagctggcgaccggcgccacg
ctgcagctcacgcagagcacgagcctctatgcggagctcggcaagctgtggtcttcgggt
ggcgacacccgtgtgcgcagcggcatcaacggcagcgtgggcgtgaagattcgctggtag
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