Variovorax sp. PMC12: C4F17_27075
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Entry
C4F17_27075 CDS
T05380
Name
(GenBank) LysR family transcriptional regulator
KO
K21645
LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_27075
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
LysR family
C4F17_27075
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HTH_1
LysR_substrate
Motif
Other DBs
NCBI-ProteinID:
AVQ84314
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Position
1:5762481..5763416
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AA seq
311 aa
AA seq
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MGPGNRPLDLEWLEDFLALAESGNFSRAAQARSIAQPAFSRHIRSLEEWVGVDLFDRSAH
PTALTAAGKRFQPLLREVLADLEAARIKARAAHDLDAASLSFAATHVLSLTFFPRWLAGV
ESRLSMGPIQTISDSSYACEDLMLQRRVQFVLCHGHAGAPGRLDDTGYPVQRLSEDVLLP
VSAPGANGAPLHALGAGQSPSVLAYSDASGLGRIMRAMQDSEFGKDFAASLSIVFTAHHA
ALLRTMALEGRGLAWLPMSLVADDLRSGTLADAGAGSWRVPVDIRLYRQQAHMAPVAEAL
WALVSEGASGA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgggccctggcaaccgaccgctcgacctggaatggctggaagatttcctggccctggcc
gagtccggcaatttctcgcgtgccgcgcaggcgcgctccatcgcgcagccggcgttcagc
cgccacatccgttcactggaagagtgggtgggcgtcgacctgttcgaccgcagcgcgcac
cccacggcgctcacggcggcgggcaagcgcttccagccgctgctgcgggaggtgctggcc
gatctggaggccgcccgcatcaaggcccgcgccgcgcacgacctggacgcggccagcctg
agctttgccgccacgcacgtgctgtcgctcaccttctttccgcgctggctcgccggcgtg
gagtcgcgcctgagcatggggcccatccagaccatctccgacagctcgtatgcctgcgaa
gacctgatgctgcagcgccgcgtgcagttcgtgctgtgccatgggcacgcgggcgcgccg
gggcggctcgacgataccggctacccggttcaacgactgagcgaagacgtgctgttgccc
gtgagcgcgcccggtgcgaacggcgcgccgctgcacgcgctgggcgcaggccagtcgcct
tcggtgctggcctacagcgatgcttcggggctgggccggatcatgcgggccatgcaggac
agcgagttcggcaaggacttcgccgcgtcgctgtcgatcgtcttcacggcccaccatgcc
gcgctgctgcgcaccatggcgctcgaaggccgcggcctcgcgtggctgccgatgagcctg
gtggccgacgacctgcgcagcggcacgctggccgatgccggcgcgggcagctggcgcgtg
ccggtggacatccggctgtaccgccagcaggcacacatggcgccggtggccgaggcgctg
tgggcgctggtcagcgaaggcgcatcaggcgcctga
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