Variovorax sp. PMC12: C4F17_27640
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Entry
C4F17_27640 CDS
T05380
Name
(GenBank) LysR family transcriptional regulator
KO
K21703
LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_27640
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
LysR family
C4F17_27640
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
Motif
Other DBs
NCBI-ProteinID:
AVQ84853
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Position
2:2767..3633
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AA seq
288 aa
AA seq
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MFHQYYKSIRCFHAVAKTGGFTSAAHYLHIGQPTVTDQVKALETRFGVELFLRTGRSVRL
TAVGERLYAITQGLFGQEEEAIQFLQSAHKLKAGVVRVGAVSPPIALELAHNFRQAHPSL
ELTVSIGSEDATLRGLQDFDIDVGIMVEPAAIEGLHIAPYRDERIVAVVPENHPWMARPS
IGTGDIAGEAVILREAGSKTRHRVERACQKKNVHLNCVMEINSREAILHAVANGMGIGFV
TQVEFIPLPGLAAVQIDDSELSISYSLCCLAVRKDRPLIRSLFEVALQ
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaccagtactacaaatcaattcgttgcttccatgccgtggcaaagacaggcggc
ttcacctcggcggcgcactatctgcacatcggccagcccacggtgacggaccaggtcaag
gcgctggaaacacgtttcggggtcgaactcttccttcgcaccggccgcagcgtccggctc
accgccgtgggagaacggctctatgcgatcacccaggggctgttcggacaggaggaggaa
gcaatccagttcctgcagagcgcgcacaagctcaaggccggcgtggtccgtgtgggtgcg
gtgtctccgccgatcgcgctggaactcgcgcacaacttccggcaggcgcatccctcactg
gaactgaccgtctcgatcggctccgaagacgccacactgcggggcctgcaggacttcgac
atcgacgtcggcatcatggtggagccggcggcgatcgaggggctgcatattgccccctat
cgcgacgagcggatcgtagccgttgtgcccgaaaaccatccatggatggcacgcccctcg
atcggcaccggtgacatcgcgggagaggcggtcatcctgcgcgaggccggatcgaagacc
cgccatcgcgtcgaacgcgcatgccagaaaaagaacgtgcacctgaactgcgtcatggaa
atcaacagccgcgaggccatccttcacgcggtcgccaacggcatgggcattggctttgtc
acccaggtggagttcattcccctgcccggcctcgccgcggtccagatcgacgacagcgaa
ctgtcgatcagctactcgctatgctgcctggcggtgcgcaaggaccggccgttgattcgc
tccctgttcgaagtggcgcttcaatga
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