Variovorax sp. PMC12: C4F17_28870
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Entry
C4F17_28870 CDS
T05380
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4F17_28870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vam03019
]
C4F17_28870
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_28870
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4F17_28870
Messenger RNA biogenesis [BR:
vam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4F17_28870
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4F17_28870
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AVQ85069
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All DBs
Position
2:300977..302722
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AA seq
581 aa
AA seq
DB search
MAGHTKAKGIHGSVRQVLHGVFGHRHLRRGQAEVIERVMAGLPTLAVMPTGAGKSLCYQL
PALLLEGKTVVVSPLIALMKDQCDRMRQLGIHAVQVNSALGAEEVAQAERDIADGSARIV
LTTPERLAEPDFLRRLGAHPTALVVVDEAHCISQWGHDFRPAFLEIGPSIKALRSPAVLA
LTATAGEEVVADVMKQLGIPRTGLVDTGAYRDNLQFAVEQLADEDERLRRTVELVAQETG
SGIVYAATVKAAERIFDALKARDVAAALYHGKLGSRERTAAQEAFMAGEVRVMVATNAFG
MGIDKPDIRFVLHGQMPSSLHAYYQEAGRAGRDGERARCTLLFHAKDRTVQQFFLAGKYP
QLEDLDAIHRQLLASPPDPAGWTAARLLDALEQPRTRLQAGIALLKQAQVLRADRRARLS
VRKTEITDADLRALLETYTQRRAQDRETLERMVAYAQSGQCRWQMLLGDLDESARMRRCG
TCDNCRRIAAHEAAMAQPIVVSAGNAQQASPALSAFCAGDAVKVRRFGRGTVVASDGSSV
TVGFDDGSERCFHPDYVTALRRSMARAAAVRKSLPACAQAA
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcaggccatacgaaggcgaagggcatccacggcagcgtgcggcaggtattgcacggc
gtcttcggccaccggcatctgcgccgcggccaggccgaggtgatcgagcgcgtcatggca
ggcttgccgacactcgccgtgatgcccacgggcgcgggcaagtcgctgtgctaccaattg
cccgcgctgctgctcgagggcaagacagtggtggtgtcgccgctcatcgcgctcatgaaa
gaccagtgcgaccggatgcggcagctgggcatccacgcggtgcaggtcaacagcgcgctc
ggcgccgaggaagttgcgcaggccgagcgcgacatcgccgacggcagcgcgcggatcgtg
ctgacgacgcccgagcggctggcggagcccgattttctccggcgcttgggtgcgcatccg
acggcgctggtcgtcgtggacgaggcgcattgcatttcgcaatgggggcacgattttcgc
cccgccttcctggagatcggaccgtccatcaaggcgctgcgcagcccggccgtgctggcg
ctgacggccacggccggcgaagaggtggttgccgacgtgatgaagcagctgggcattccc
cgcacgggcctggtcgatacgggcgcctaccgcgacaacctgcagtttgcggtcgagcag
ctggccgacgaggacgagcgtttgcgccgcaccgtcgagctggtggcgcaggagacaggc
agcggcatcgtgtatgcggcgacggtgaaggccgccgagcgcatcttcgatgcgctgaag
gcacgcgacgtggccgcggcgctctatcacggcaagctcggttcgcgcgagcgcaccgct
gcgcaggaggccttcatggcgggcgaggtgcgggtcatggtggccaccaatgcgttcggc
atgggcatcgacaagcccgacatccgcttcgtgctgcatggccagatgccctcgagcctg
cacgcgtactaccaggaagccggacgcgccgggcgcgacggcgagcgcgcgcgctgcacc
ctgctcttccacgccaaggaccggacggtgcagcagttctttcttgccggcaagtatccg
cagctcgaggacctcgacgcgatccaccggcaattgctggcgtcaccgcccgatcccgcg
ggctggacggccgcccgcctgctcgacgcgctggagcagccacgcacccggctgcaggcc
ggcatcgcgctgctcaagcaggcacaggtgctcagggccgaccggcgcgcacgcctgtcg
gtgcgcaagaccgagatcaccgacgccgacctgcgcgccttgctcgagacctacacgcag
cggcgcgcgcaggaccgcgagacgctcgaacgcatggtggcgtacgcgcagtccggccag
tgccgatggcagatgctgctgggcgatctggacgagtccgcgcgcatgcggcgctgcggc
acgtgcgacaactgccggcgcattgcggcgcatgaggcggccatggcccaacccatcgtc
gtgagcgccggcaacgcgcaacaggcctcgccggcgctgtcggccttttgcgccggcgac
gccgtgaaggtccggcgcttcggccggggcacggtggtggcgtcggacggcagctcggtc
acggtggggttcgacgatggaagcgaacgctgctttcatccggactatgtgacggcgctg
cgccggtcgatggcgcgcgccgccgccgtgcggaagtcgctgccggcatgcgcgcaggcg
gcctga
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