Variovorax sp. PMC12: C4F17_29535
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Entry
C4F17_29535 CDS
T05380
Name
(GenBank) LysR family transcriptional regulator
KO
K17737
LysR family transcriptional regulator, carnitine catabolism transcriptional activator
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_29535
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
LysR family
C4F17_29535
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GFIT
Motif
Pfam:
LysR_substrate
HTH_1
Fur_reg_FbpB
HTH_30
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AVQ85183
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Position
2:complement(451853..452797)
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AA seq
314 aa
AA seq
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MNVSPRHLRMFLALAESLNFSKAAEQLFMTQPSLSKAVRDLEESLGLPLFERTTRHVRLT
AGGAQLVAVARSVVGEYDAGLKRLQSSAESEARHLSIAAFPSLASVLLPQVCAALEARHA
ASRITVNDCSNTTAVGQVLRYQVDFALASIAPSHPDLHYEEVVRDRFVLLAGRRWRRKLN
PVVCLEEMISLPLITMTDNSTAMRYISAAYLQRGIEFRPKMQFDQLGTVAAFVTEGLGVA
VLPYLAAMPLLRLQKVDIEDGPLRSIGIVTRRLGNPTTIAVDAMAEVRRTFEELVLQNPE
RLLAPTKSTRRANS
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtttcccctcgacacctgcgcatgtttttggccttggcggagtcgctgaacttc
agcaaggcggcggaacagttgttcatgacgcaacccagtttgagcaaggctgttcgggac
ttggaggagtccttggggctaccgctgttcgagcgcaccacgcgccatgttcggctgaca
gcgggcggcgcgcagctcgtggcggtggcgcgcagtgtggtgggcgagtacgacgccggt
ctcaagcgactgcaatcctcggcggagagcgaggcacgacacctgtcgatcgcggcgttt
ccctctctggccagcgtgcttctaccccaggtgtgcgccgcgctggaagcacgccacgcc
gcgtcccgcatcaccgtcaatgactgcagcaacaccacagctgtgggacaagtgctgcgc
taccaggtggactttgcgctggcttcgatcgcgccctctcatccagaccttcactacgag
gaagtggtccgggaccgttttgtcctgctggccggccgacggtggaggcggaagttgaat
cctgtcgtgtgcctggaggaaatgatttcgctgccgctcatcacaatgacggacaacagc
acggcaatgcgctacatcagcgccgcctatctgcagcgcggcattgaattccgaccgaag
atgcaattcgatcaactgggtaccgtggccgcgttcgtgactgaaggtttgggagtcgcg
gtgcttccctatttggcggccatgccgttgctccgactacagaaggtcgacatcgaggat
gggcccctgcgttcgatcggaatcgtcacgcgacgcttgggcaacccgacgacgatcgca
gtcgatgccatggcggaggttcgccgaacattcgaggaactggtcctgcaaaacccggaa
cggctgcttgcacctacaaaatccacgcgccgggcaaattcttga
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