Variovorax sp. PMC12: C4F17_30785
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Entry
C4F17_30785 CDS
T05380
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00061
Fatty acid biosynthesis
vam00071
Fatty acid degradation
vam01100
Metabolic pathways
vam01212
Fatty acid metabolism
vam02024
Quorum sensing
vam04146
Peroxisome
Module
vam_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
C4F17_30785
00071 Fatty acid degradation
C4F17_30785
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
C4F17_30785
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_30785
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vam01004
]
C4F17_30785
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vam04147
]
C4F17_30785
Enzymes [BR:
vam01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
C4F17_30785
Lipid biosynthesis proteins [BR:
vam01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
C4F17_30785
Exosome [BR:
vam04147
]
Exosomal proteins
Exosomal proteins of breast milk
C4F17_30785
Exosomal proteins of breast cancer cells
C4F17_30785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
AVQ85408
LinkDB
All DBs
Position
2:complement(730914..732503)
Genome browser
AA seq
529 aa
AA seq
DB search
MDGTWPFCKSLALDRRPRRHEDMSQVFLDQRSMARDALMQRALRAARGFDTAGVREGDAI
ALLLRNDFAFFEAQQAAAALGAYAVPINWHGKPEEVLYILNDVAPKVVVGHADLLAPVRE
HIPAGTVVITVPTPPEAVRAFSLAEAATQVPADAAEWNAWLGAFAPWDGPPRRSRATMIY
TSGTTGRAKGVKRDAATPEQAAAYVQLMRRVYGLQPGVRALIGGPLYHSSPNAYARQALP
ICDLLVMQTRFDAEAVLAAIERHRISHMVAVPTMFVRMLKLPEDVRERYDLSSLKWVTHT
GAPCSAETKCALMDWWGPVVYETYGGTEVGTATLSTPEDWLAFPGSVGRLNPDARMVLYG
EDGQPVAPGEVGEIFVRVPAYADFTYHNHPEKRKEVERDGLISCGDVGYVKDDHLYLCDR
RSDMVISAGVNIYPAEIEAVLLQCPLVRDCAVFGIPDEEMGESLAAAVEPMPGTAPDADA
LRAFLEDRIARYKVPRRFDFHAALPREDSGKIFKRRLRDPFWQAAGRKI
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
attgacggaacctggcctttctgcaagagcctggctcttgatcgcagaccacggagacac
gaagacatgagccaggtgttcctcgaccagcgcagcatggcgcgcgacgccctgatgcag
cgcgcgctgcgcgccgcgcgcggcttcgatacggcgggcgtgcgagaaggcgatgccatc
gcgctgctgctgcgcaacgacttcgccttcttcgaagcgcagcaggcggccgccgcgctc
ggcgcctacgcggtgcccatcaactggcacggcaaacccgaagaggtgctctacatactg
aacgatgtggcgccgaaggtggtggtcgggcatgccgaccttctcgcgccggtgcgcgaa
cacattcccgctggcaccgtggtcatcaccgtgcccacgccgcccgaggcggtccgcgcc
ttctcgctggccgaagccgcgacgcaggtgccggccgatgcggcggaatggaacgcctgg
ctcggagccttcgcgccatgggacggcccgccgcggcgcagccgcgcgaccatgatctac
acctcgggcaccaccggccgggccaagggcgtgaaacgcgacgcggccacgccggaacag
gctgccgcgtacgtgcagctgatgcgccgcgtttacggcctgcagccgggcgtgcgggcg
ctcatcggcggcccgctgtaccactcctcgcccaacgcctacgcacgccaggccttgccg
atctgcgacctgctggtgatgcagacccggttcgacgccgaggccgtgctcgccgccatc
gagcggcaccgcatcagccacatggtggccgtgccaaccatgttcgtgcgcatgctcaag
ctgcccgaagacgtgcgcgagcgctacgacttgagttccctgaagtgggtgacacacacc
ggcgcgccctgctcggccgagaccaagtgcgccctcatggactggtggggcccggtggtc
tacgagacctacggcggcaccgaggtcggcaccgccacgctcagcacgcccgaagactgg
ctcgccttccccggcagcgtgggccggctcaaccccgatgcgcgcatggtgctctacgga
gaagacggccagccggtggcgcccggcgaggtcggcgagatcttcgtgcgcgtgccggcc
tacgccgacttcacgtaccacaaccatcccgaaaagcggaaagaggtggagcgcgacggc
ctcatcagctgcggcgacgtcggctacgtgaaggacgaccacctctacctgtgcgaccgc
cgctccgacatggtgatttcggccggcgtgaacatctatccggccgagatcgaggccgtg
ttgctgcagtgtccgctcgtgcgcgactgcgccgtcttcggcatacccgacgaggaaatg
ggcgaatcgctggccgcggccgtcgagccgatgcccggcaccgcacccgacgccgatgcg
ctgcgcgcctttctggaggaccgcatcgccaggtacaaggtgccgcgccgcttcgacttc
catgccgcgctgccgcgagaggacagcggcaagatcttcaagcgccggctgcgcgacccg
ttctggcaggccgcgggccggaagatctga
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