KEGG   Variovorax sp. PMC12: C4F17_31295
Entry
C4F17_31295       CDS       T05380                                 
Name
(GenBank) 6-carboxyhexanoate--CoA ligase
  KO
K24012  acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
Organism
vam  Variovorax sp. PMC12
Pathway
vam00010  Glycolysis / Gluconeogenesis
vam00620  Pyruvate metabolism
vam00640  Propanoate metabolism
vam01100  Metabolic pathways
vam01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:vam00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    C4F17_31295
   00620 Pyruvate metabolism
    C4F17_31295
   00640 Propanoate metabolism
    C4F17_31295
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:vam01004]
    C4F17_31295
Enzymes [BR:vam01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.13  acetate---CoA ligase (ADP-forming)
     C4F17_31295
Lipid biosynthesis proteins [BR:vam01004]
 Acyl-CoA ligase
  Short/medium chain acyl-CoA ligase
   C4F17_31295
SSDB
Motif
Pfam: ATP-grasp_5 Succ_CoA_lig CoA_binding_2 CoA_binding Ligase_CoA_2 ATP-grasp_2
Other DBs
NCBI-ProteinID: AVQ85501
LinkDB
Position
2:840832..842964
AA seq 710 aa
MQAVEVGRGMDALFSPRSIAIFGASDDVTKIGGRPLQFLQKYGYAGGIYPINRKGGLVQS
LPAYASVDDVPEVPELAVVAVPPAGVLDVVRGCARRGVKAAVILSAGFSEMGDEGRQLQE
QIGEVARATGMRVVGPNCLGAIGVPDRSIATFSVALESSFPVAGSVGIVSQSGNLGSFTL
RLAGERGLGVSRMLTTGNECDVDIADAIASLAGDPGTRVILCCMETCRDGDKLLRAMAMA
REAGKPLVVLKVGVSEAGSEAAASHTGALACSDAVFDAVLRKGGAIRVPSIEQLLEVGHA
LSVVGPAHVPGGNRVAVLTASGGFGVLLADAASAQGLALPKLAAHTQERILSVVPFASPS
NPVDMTAQVSSRPEVLAQMLDAVARDASCDALILQSANAFHLPRLRDVFLSALEQLRKDH
PSRLILLCARAPHEVRATLNGMGFPVVEGIDAACATLAALLRFGARGTTETAAAAIERMP
LAAEAFATEASAKAVLSQAGLPVPQEVIAANRDEALAAARALGFPLVLKIVSPDIAHKTE
VGGVFVGVQSEAQLLEEYANLLARVAQKAPEARIAGVLVAQMVQGGVELILGTKKDPVFG
PMVMVGLGGIFAEIFKDVALQPAPVDEAQATAMLRSLKAFALLDGARGRPRADVQSAAKA
VAALSRFAMRHAQDVSEIDINPLMVLEQGRGAHALDALLVPEEQTTKAKP
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgcaggccgtggaagtggggcgcggcatggacgcgctgttcagcccgcgctcgatcgcc
atcttcggtgcgtcggacgacgtcaccaagatcggcggccgtccgctgcagttcctgcag
aagtatggctacgcgggcggcatctacccgatcaaccgcaagggcggcctggtgcagtcc
ctgccggcctatgcgagcgtggacgacgtgcctgaagtacccgagctggccgtggtcgcc
gtgccgcccgcgggcgtgctcgacgtggtgcgcgggtgtgcccggcgcggcgtgaaggcc
gcggtgatcctgtccgccggattctccgagatgggagacgagggccgccagctgcaggag
cagatcggcgaggtggcccgcgccaccggcatgcgcgtggtcggcccgaactgcctgggc
gcgatcggcgtgcccgacaggagcatcgccaccttctcggtggcgctggagtcgtcgttt
cccgtggccggctccgtgggcatcgtctcgcagagcggcaacctgggcagcttcacgctg
cgcctggccggcgagcgcggcctgggcgtcagccgcatgctgaccacgggcaacgaatgc
gacgtggacatcgccgacgccatcgcgtctctggcgggcgaccccggcacccgcgtgatc
ctgtgctgcatggaaacctgccgcgacggcgacaagctgctccgggccatggccatggcc
cgcgaggccggcaagccgctggtggtgctgaaggtcggggtctccgaggcaggcagcgag
gccgcggcctcgcacaccggcgcgctggcctgctccgacgccgtgttcgacgccgtgctg
cgcaagggcggcgccattcgcgtgcccagcatcgagcagttgctcgaagtgggccacgcg
ctgtccgtcgtcggcccggcgcatgtgccgggcggcaaccgcgtggccgtgctcacagcc
tcgggcggcttcggcgtgctgctggccgatgcggccagcgcgcagggcctggctttgccc
aagctggccgcgcacacgcaggagcgcatcctgtcggtggtgcccttcgcctcgccctcc
aatccggtggacatgacggcgcaggtgtcgagccggcccgaagtcctggcgcagatgctc
gatgccgtcgcgcgggatgccagttgcgacgcgctgatcctgcagtcggccaacgccttc
cacctgccccgtctgcgcgatgtgtttctttccgcgctggaacagttgcgcaaggaccat
ccctcgcgcctgatcctgctgtgtgcccgcgcgccccacgaggtgcgggccacgctcaac
ggcatgggcttcccggtggtggagggcatcgatgccgcttgcgcgaccctggccgcgctg
ttgcgcttcggcgcgcgaggcaccacggagaccgccgcggcggccatcgagcgcatgccg
ctggcggcggaagccttcgccaccgaggcaagcgccaaggccgtgctgtcgcaagccggc
ctgcccgtgccgcaggaggtgatcgcagccaaccgtgacgaggcgctggctgcggctcgt
gcgctgggctttcccctggtgctgaagatcgtctcgcccgacatcgcccacaagaccgag
gtcggcggcgtgttcgtcggcgtgcagtccgaggcgcagctgctcgaggaatacgcgaac
ctgctggcgcgcgtggcgcagaaggcgcccgaagcccgcatcgccggcgtgctggtcgcg
cagatggtgcaggggggtgtcgagctgatcctgggcaccaagaaagacccggtgttcggt
ccgatggtgatggtcgggctgggcggcatcttcgccgagatcttcaaggacgtggcgttg
cagccggcgcccgtcgacgaggcgcaggccaccgccatgctgcgctcgctcaaggccttc
gcgctgctcgacggcgcgcgcgggcggccccgggccgacgtgcagtcggccgccaaggcg
gtcgcggcgctgtcgcgattcgccatgcgccatgcccaggacgtgtcggagatcgatatc
aaccccttgatggtgctggagcaggggcgcggcgcccatgcgctggatgcgctgctcgtg
cccgaggaacaaaccacgaaagccaagccatga

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