Vibrio anguillarum 775: VAA_02311
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Entry
VAA_02311 CDS
T01536
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
van
Vibrio anguillarum 775
Pathway
van03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
van00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAA_02311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
van03019
]
VAA_02311
Enzymes [BR:
van01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VAA_02311
Messenger RNA biogenesis [BR:
van03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAA_02311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NACHT
PhoH
AAA_22
Flavi_DEAD
Cas3-like_C_2
SF0329
AAA_25
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AEH33568
LinkDB
All DBs
Position
I:2137632..2138924
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AA seq
430 aa
AA seq
DB search
MRKPSLANCFDFLTLRARMPFSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVI
AAAQTGTGKTASFVLPILQMLSQGTTQRAKRVRALILAPTRELALQVEENVTQYAKYLPL
TCLAMYGGVDSQKQKQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRMLDM
GFIEDINKIVDRLPLNRQNLLFSATLSRPVRELAKSAINDPIEIDVAGYNRTPNQIEQWI
ITVDKDQKSALLSHLITENQWQQAMIFIETKHGAAKLASQLEKRGIAAEAFHSGRSQEVR
EKLLADFKAGKLQFLIATGVAARGIDIDNLERVVNYDLPYPAENYIHRIGRTGRAGATGE
AISLVSRDDFKNLCMIESRLGHLLVRKEIEGFTPKKDVPISILNYHLKKRDNEHSSAPRR
SPRPKQEKRS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagccatcgcttgctaactgttttgactttttaactctgagagcccgcatgcca
ttttccaacctaggattgagcgatccaatcttaaaagccgttcacgaactcggctattct
gccccaacaccgattcaagaacaggcaatcccagccattttgacgggtaaaaatgtcatt
gcggcagcgcaaaccggtacgggtaaaaccgctagctttgtactgcccattttgcagatg
cttagtcaaggaacaactcagcgcgccaaacgtgttcgcgcattaattttagcgcccact
cgcgaattggctctgcaagtggaagagaacgtcactcaatacgcaaagtatctgccctta
acctgccttgcgatgtacggcggtgtcgattcgcaaaaacaaaaacaacgcttgattgaa
ggggtggatattttgatcgccacgccggggcgcttgcttgatatgtatggccaacgcgcc
gttcattttgatgagcttgaagtgttggtgatggatgaagctgaccgcatgctcgacatg
ggtttcattgaagacatcaataaaattgttgatcgcctgccactaaaccgtcagaactta
ctgttttcggcgaccctttctcgcccagtgcgcgagttggccaaatcagccattaatgat
ccgattgaaattgatgtcgctggttacaaccgcacgccaaatcaaatcgagcagtggatt
atcactgtcgataaagatcaaaaatctgcactactgagccatttgattactgaaaaccaa
tggcaacaagcgatgattttcatcgaaaccaaacacggtgcggcaaagctggcgagccaa
ctggaaaagcgtggcattgcggcagaggcgtttcacagtggccgtagccaagaagttcgt
gaaaaattattagccgatttcaaagcaggtaaactgcaatttttgattgcaacgggcgtt
gccgcgcgcggtattgatattgacaacttagaaagagtggtgaattacgacttgccttat
cctgcggagaactacattcaccgtattggacgaaccggtcgtgctggtgcaaccggtgaa
gcaatttctctcgtatcacgcgatgattttaaaaacttgtgcatgattgaaagccgctta
ggacatttgcttgtgcgtaaagaaattgaaggtttcacaccgaaaaaagacgtgcctatt
tccattttaaattaccacttgaaaaagcgtgataacgagcactcaagtgcaccgcgtcgt
agccctcgccctaaacaagaaaaacgctcataa
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