Vibrio anguillarum 775: VAA_03351
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Entry
VAA_03351 CDS
T01536
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
van
Vibrio anguillarum 775
Pathway
van03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
van00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAA_03351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
van03019
]
VAA_03351
03009 Ribosome biogenesis [BR:
van03009
]
VAA_03351
Enzymes [BR:
van01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VAA_03351
Messenger RNA biogenesis [BR:
van03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VAA_03351
Ribosome biogenesis [BR:
van03009
]
Prokaryotic type
rRNA processing factors
VAA_03351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEH32717
LinkDB
All DBs
Position
I:complement(1191898..1194978)
Genome browser
AA seq
1026 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDGYTYQGRPNIKEALKEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKTALSSLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWSAIKQASDLRPAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
LEHIRLVRPDFVSRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVMAVVPVPIASYLLNEKRRSINHIERIQEVEITIVPNSEMETP
HFEVIRVREGEEQEILSYLVPMKLEALKEAEGKESSDIDFKPKRIEEPALKGFAAPAQTI
PAPTPKAEVAVPVKEIAVEPGKPGLFGRIVKALGIIFSTTTEEVKTEEEQQKQENERSQA
PRQRRDRNDQRRRNGRGENANRDNANRDRNKRKPVNTSALVEETQDKEIVATNEPRKTQA
RKPKQERRNKRDDSKSEKLAEQGLQLAAEAQAVTLTANEDKTEEKTAKVKERRQRRKLNK
QVRVKDQTIAQEQPEAEMLINTTPAAEVIEAVKAETAQSVETSVVTQNDDNENDDQNQRR
NRRSPRHLRASGQRRRRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLSKPVYQAPVTEQV
AAVESIQQVADVVDNNTEITLGGFAFPEMAMGKVIIRHEENQSVVEEPVTVSLQDSIEPQ
VPSAVVTESVSVTESVTVEAVISEPVIAEVVIEKTTAIELVVEEKATTEKVPALKVEAVT
KAPEAVLPKTIKAHAFSPMTKASGSLLLKEIEIVSAPFHAERIATRAAGSQSAQSQAGAA
MTKPQY
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcaaaaagaagagttgcgtgtcgcgctggttgat
ggccaacgactttttgatctagacatcgaaagtccagggcatgaatctaaaaaggcgaac
atctataaaggacgtatcacccgtgttgaacctagtttagaagctgcatttgttgattac
ggcgctgaacgtcacggtttccttcctctcaaagaaattgcccgcgaatacttccctgat
ggctacacttaccaaggccgtccaaacatcaaagaagcgcttaaagaaggccaagaagtt
attgtccaagttgaaaaggaagaacgaggcagcaaaggcgctgcgttgaccactttcatt
tctcttgctggtagctacctagttcttatgccaaacaatcctcgtgccggtggtatttca
cgccgtatcgaaggcgatgagcgtaccgaattaaaaaccgcattgagcagtttagagctt
cctcaaggcatgggccttatcgttcgcactgcaggtgtgggcaaaagtgcggaagagcta
gagtgggacttaaacgttttgctcaatcactggagcgcaatcaaacaggcttcagatttg
cgtcctgcaccgctacttattcaccaagagagcaacgtcattgtacgcgcaattcgtgat
tatctgcgtcgtgacattggtgaaattctaattgatagcaacacaatttatgaacgtgcc
cttgagcacattcgtttggtgcgtcctgatttcgtgagtcgtgtaaaaaaatacgacggt
gaagtacccctatttagccattaccaaattgaaagccaaatcgaatcggctttccagcgt
gaagtgcgtttgccttctggtggctctattgttatcgacccaaccgaagcattgacctca
attgatatcaactctgctcgtgcaacaaaaggcggcgatattgaagagacggcgcttaac
accaacttagaagcagccgatgaaattgctcgccaattacgtctgcgcgatttgggcgga
ttagtggttatcgatttcatcgatatgactcctgttcgtcaccaacgtgaagtagaaaac
cgtttacgcgatgctgtacgcctagatcgtgctcgcgtacaaattggccgaatttcacgt
tttggcttgttagaaatgtcgcgtcagcgcttgagcccatcacttgccgaagcaagccac
catatctgcccacgctgctctggcaccggagtggttcgtgataatgaatctcttgcgctc
tctgttttacgtctcattgaagaagaagcactaaaagataataccgctcaagttatggcg
gtggttcccgttcctattgcatcttatctactcaatgaaaaacgtcgctcaatcaatcat
attgaacgcattcaagaagtcgagatcaccattgtccctaactctgaaatggaaacgcct
cattttgaagtgatccgtgtccgtgaaggggaagagcaagaaatactctcttacttagtg
ccaatgaaactagaagcactgaaagaagcagaaggtaaagaaagctcagatatcgatttc
aaaccaaaacgcattgaagaacctgcgttgaaagggtttgctgctccagcacaaactatt
ccagctccaacacctaaagcagaggtagcggttccagtcaaagagatcgctgttgaacca
ggtaaaccaggtctatttggccgcatcgttaaagctcttggtatcatcttctcaaccacc
acggaagaggtgaaaactgaggaagagcaacaaaaacaagaaaacgaacgtagccaagca
ccacgccagcgtcgtgatcgaaatgaccaacgtcgtcgtaacggacgcggtgaaaatgct
aatcgcgacaacgcaaaccgtgatagaaacaaacgtaaacctgtcaatacctctgctctt
gttgaagaaacacaagacaaagaaattgttgctaccaacgagcctcgtaagacacaagct
cgcaagccaaaacaagagcgccgcaacaagcgtgatgacagcaaatctgaaaagttagcg
gagcaagggctacaacttgcggctgaagcgcaagccgttaccttgacagcgaatgaagat
aaaacggaagagaaaacggcaaaagtcaaagaacgccgtcaacgccgtaagttaaacaaa
caagttcgtgtaaaagatcagacaatcgctcaagaacaaccagaagctgaaatgttgatc
aatacaaccccggcagcagaggttattgaagccgtaaaagctgaaacagcacaatctgtt
gagacatcggttgttacacaaaatgacgacaatgagaatgacgatcaaaatcaacgtcgc
aatcgccgctcccctcgtcatttacgagccagtggtcaacgtcgacgccgtgatcgtcgc
cctaacccattccgtttacgcaaaggtggggttgcctctcctgagatggcaatgggtaaa
gtgatgcctcgttatgacctctctaaaccagtgtatcaagcaccggtaacagagcaagtc
gcagcggttgaatctattcaacaagtggcagatgtcgtagataacaataccgagataacg
ttaggtggttttgctttccctgaaatggcaatgggtaaggtcattattcgccacgaagag
aaccagagcgtcgttgaagaacctgttacggtctctttgcaggactctattgaacctcaa
gtaccatcggcagtggtaacagaatcggtttcagtcacagaatcggtcactgtagaagcc
gttatttcggagccagtaatcgcagaagttgttattgaaaagactaccgctattgagctc
gttgtcgaagaaaaagccacgacagagaaagtaccagcattgaaggttgaagcagtaact
aaggcacctgaagccgtattacctaaaacaatcaaagcgcatgcattctctccgatgacc
aaagcctcaggctctttgttgctcaaagagattgaaatcgtatcagcacctttccatgct
gaacgaattgcaactcgtgcagcaggcagccagtcagcgcaaagtcaagctggtgcggca
atgactaaaccacagtattaa
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