Vibrio anguillarum 775: VAA_03562
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Entry
VAA_03562 CDS
T01536
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
van
Vibrio anguillarum 775
Pathway
van03030
DNA replication
van03430
Mismatch repair
van03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
van00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAA_03562
03430 Mismatch repair
VAA_03562
03440 Homologous recombination
VAA_03562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
van03032
]
VAA_03562
03400 DNA repair and recombination proteins [BR:
van03400
]
VAA_03562
Enzymes [BR:
van01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VAA_03562
DNA replication proteins [BR:
van03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VAA_03562
DNA repair and recombination proteins [BR:
van03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VAA_03562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEH32521
LinkDB
All DBs
Position
I:989667..993146
Genome browser
AA seq
1159 aa
AA seq
DB search
MPEPKFVHLRVHSDFSMIDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHNC
GVKPIIGADFVMQSEEFGDELTKLTVLASDNVGYKNLTLLISDAYLRGHVQHLPVIDKAW
LVKYAEGLIVLSGGKSGEIGKALLKGNQALVDKCVEFYQTHFVDRFYLELTRTGRADEES
YLHFALELAENNDLPVVATNEVVFLSEEFFEAHEIRVAIHDGYTMEDPRRPKNYSPQQYL
RTEAEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPAFPTEGMKETEYLVMKSQEGL
EERLEFLFPDPDVRAQRRPEYDERLQIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPLDPGMTLEKAFKAEPA
LPELYNNDEDVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFSPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLQREGKEPVRIEAIPLEDPVSFRVL
QNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRAIFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECLRMNLKVLPPDINAGLYRFNVDENGAIVYGIGAIKG
VGEGPIEAILEARTAGGYFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQFHQAEAFGQVDMFGVLTDAPEEVEHKYTQVPEWPEKVWLEGERDTLGLY
LTGHPINAHIKELAKYTSCRLKDATPTRRDQSVTLAGLVIAAKVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALERYAELLEKDRILVISGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSISVEQSQIDSQFFERFSQILEPHRAGTIPVNVYYQRAEARVRLTLGTQWRVTPSDT
LLDELKQLLGKDQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaccaaagtttgtccaccttcgtgtccacagcgacttttctatgatcgatggc
ttgtccaaagtgccaccgcttgtgaaaaaagtggccgagatggggatgcctgccgtagcg
ttgaccgacttcacgaacttatgtggtttggtcaaattttatggtaccgctcataactgt
ggggtaaagccgattatcggtgcagattttgtcatgcaatccgaggagtttggtgatgag
ctcaccaagctgacggttctagcgagtgataatgttggttacaaaaatctgaccttactg
atctccgatgcttatctacgcggtcatgtgcaacacctacctgtgattgataaagcgtgg
ctagtgaaatatgccgaaggcttgattgtgctttcgggtggaaaaagtggtgaaataggc
aaagcactgcttaaaggtaatcaggcgttagtcgataaatgtgtcgagttttatcaaact
cattttgtcgatcgtttttaccttgaattgactcgcacagggcgagccgacgaagagagc
tatctgcactttgctctagaattggctgaaaataacgatctgcccgtcgttgcaaccaat
gaagtggtgtttctcagcgaagagttttttgaagcgcatgaaattcgagtagcgattcat
gatggctacaccatggaagatcctcgtcggccaaaaaattacagcccacagcaatatttg
cgcaccgaagcggaaatgtgtgagctgtttgccgacattcctgaagcgctgcaaaacagt
gttgagattgccaagcggtgtaatgttaccgtccgtttgggggaatatttcttgcccgcc
tttccaacggaaggaatgaaagaaaccgaatacttggttatgaaatcacaagaaggcctt
gaagagcgtcttgaatttctgttccccgatcctgatgttcgcgcacaacgtcgccctgaa
tatgatgaacggctgcaaattgagctcgaagtaattaataacatgggattccccggttat
ttcttgattgtgatggagttcatccagtggtcaaaagataacgatattccggtgggaccg
gggcgcggatcgggtgcgggttcattggtggcttacgcgctcaaaattaccgatttagat
ccactacaatatgatttacttttcgaacgtttcttgaacccagaacgggtctcaatgccc
gattttgacgtcgatttctgtatggataaacgtgaccaagttattgatcacgttgctgaa
atgtatggtcgtgatgcggtatcacagatcatcacctttggtactatggctgccaaagcg
gtcattcgtgacgtgggacgcgtgcttggtcatccgtttggatttgtcgaccgcatttca
aagcttattccactagatccaggaatgacactcgaaaaggcgtttaaggctgaacccgcg
ttacctgagctgtacaacaatgacgaagacgtcaaagagctgattgataagtgccgaatt
ctagaaggttgcacgcgtaacgctggtaagcatgcgggtggggtagtgatctccccaacc
acaattaccgacttttcgccgatttatgcggatgctgaagggcatttccccgttactcaa
tttgataagaacgatgttgaaaccgcaggcttagtcaagtttgacttcttaggtctacgt
accttaaccattatcgattgggcactagggctgattaacccgcgcttacaacgagaaggc
aaagagcccgttcgtattgaagctatcccgttagaagacccagtttcatttcgtgtattg
caaaattctgaaaccacggcggtattccagttagaatcgcgcggcatgaaagatctgatc
aaacgtctccagccagactgcttcgaagatatcattgcactagtggccctgtttcgccca
gggcctttgcaatcggggatggtggataactttatcgaccgtaaacatggccgagaggcg
atctcctacccagatgaaaaatggcaacatgagtcattaaaagaaattttagacccaacc
tacggcatcatcttgtaccaagagcaagtgatgcagatcgcccaagtcctagccggatac
acattaggcggcgcggatatgctgcgccgtgcgatgggtaagaaaaagccagaagagatg
gccaagcagcgggcgatttttgaagaaggttcgataaaaaacggcgtggatggcgaattg
tcgatgaaaatcttcgacttagtagaaaaattcgccggttacgggtttaacaaatcgcac
tctgcggcttatgctctggtttcttatcaaaccttatggttaaaaacccactacccagcc
gaatttatggcggcagtaatgacggccgacatggacaacaccgaaaaggtggttggctta
gtggatgaatgtttgcgtatgaatcttaaagtgttaccaccggatattaacgccggcttg
taccgctttaacgtcgatgaaaatggcgcgattgtctatggtattggcgcgatcaaaggt
gtgggtgaagggccgattgaagcgattttagaagcgcgcacagcaggcggctattttaaa
gatttgtttgatttttgcgccagaattgatctgaaaaaagtcaataagcgtgtgattgaa
aagcttatttatgcgggtgctttggatcgtttaggcccacaccgtgctgccatgatggcc
tcattaaatgatgctgtgaaagcggccagccaattccaccaagctgaagcctttggtcag
gttgatatgtttggtgtattgactgatgcgccagaagaagtagaacataaatatacgcaa
gtccccgagtggcctgagaaagtttggcttgaaggtgagcgcgatacattgggcctttat
ttgaccgggcatccaataaacgcacatattaaggaacttgcgaagtacaccagttgtcga
ctaaaagatgccacgccaacgcgacgcgatcaatccgtcactttagcagggttagtgatt
gcggctaaagtcatgaccaccaagcgtggcacgcggattggcatcatgacgttagatgat
cgttcaggacgtatggaagtgatgttattctctgatgcgttagagcggtatgcagagctg
ttagaaaaagatagaattttagtgatttctggacaggtcagctttgatgacttcaatggt
ggccttaaaatgtcggcgcgcgaagtcatggacttgggcagtgcgcgtgaaaaatatgcc
cgtggtttgtcgatatcggttgaacaatcacagatagacagccagttttttgagcgcttt
agtcagatcttagagcctcaccgagcagggactatacctgtcaatgtatactaccaacgc
gcagaggcgagagtgcgactcactcttggtacgcagtggcgtgtaaccccaagtgataca
ttgttagacgaattgaaacagctacttggcaaagatcaggtagaactcgaatttaactaa
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