Vagococcus zengguangii: FA707_09375
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Entry
FA707_09375 CDS
T05965
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vao
Vagococcus zengguangii
Pathway
vao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FA707_09375 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vao03400
]
FA707_09375 (mfd)
Enzymes [BR:
vao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FA707_09375 (mfd)
DNA repair and recombination proteins [BR:
vao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FA707_09375 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QCI87126
UniProt:
A0A4D7D047
LinkDB
All DBs
Position
complement(1968333..1971860)
Genome browser
AA seq
1175 aa
AA seq
DB search
MALLEKVLASTKINQWLEGTNESGNQLLVGLTNSAKTLAMASLYQAKGNKTVIVVPNIYQ
MGVILEDLRHLFPDEVLYSFPIDEVTSAEMSIVSPEVMAEKIQALSFLASNRSGVLVVPT
AGFRRYLPAKDTWLAYEQTISVGQELDLTALTEKLVLMGYRREGMITKPGEFSLRGSIID
IYPLTNANPYRIDLFDTEIDSLRTFDVETQRSLENVDSFLLTPATDVVVTKEELAVASEK
LRKKVAKQAAVMSDPDDKGLFMAYFDDLASEWSQGHPTESIRQWLEVVYPEKITLLDYLE
IDDQLIFDDYARILEVEKELVVEEAEWQAMKLQEVRMLTDISFGQDIRKLIKQERISQSF
LSLFQKGMGRMKFKAVTSFECRAMQQFFGQMPLLKEEVANWHKKKETVIILASDEEKSQK
LLEMMEDYDIPVVVQHHGEIIEGQTQIRLGALQNGFEWIDEKLVIVTEKELLKTVKRKRA
RRQTISNAERLRSYNELKVGDYVVHVNHGIGKYVGMETLVSGGVHQDYISILYQNNDKLF
IPVTQLDLIQKYVASESKSPKINKLGGNEWTKTKKKVAGKVEDIADDLIKLYAAREAEKG
FAFSPDDSLQKEFEDAFPYSETEDQLRSIQEIKKDMEKAKPMDRLLVGDVGYGKTEVAIR
AAFKAIRDNKQVAVLVPTTVLAQQHYETMVDRFRDFPVCVGLLSRFRSKKQQEETIEQLK
KGQLDIVVGTHRVLSSDIEFQDLGLLVIDEEQRFGVKHKERLKQLRKQVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPSNRYPVQTYVMEENFGAIRDGIEREMARGGQVFYLHNRVD
TIEQKVGELQALVPDARIAHAHGQMSEVQLENVLMDFIDGAYDVLVTTTIIETGIDIPNA
NTLFVENADHMGLSQLYQLRGRVGRSNRVAYAYFMHAPQKILSEVGEKRLQAIKDFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDTVGFDLYSQMLEEAVARKQGKEASEYKTSVEI
DLELNAYLPETYISDERQKIEIYKRVRQLESREMYDELEGDLIDRFGEFPDEVVYLLTVG
RIKMDGDRALIDSIRKSGQRLTIRLSKVGSKTYMVEDLFKALSATTLKSDMGQDGDVMVI
TLTVPNQMLEEVWLKELAKFVEALRKQRLTKEASA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggctttattagaaaaagtattagcatcaactaaaataaatcagtggcttgaaggaaca
aacgaatctggcaatcagctgttagtgggtttgaccaattcagctaaaacgctagcgatg
gctagtttgtatcaggctaaaggcaataaaacggtaattgtcgtacctaacatttatcaa
atgggcgtgatattagaagatttacgtcatttatttcctgacgaagtattatatagtttt
ccaatagatgaggtgacgtcggccgagatgagtattgtctcaccagaagtcatggcagaa
aaaattcaggcgttgtcttttttagcgagcaatcgttcaggggtattggttgtcccaaca
gctggttttcgtcgttatttgcctgctaaagacacttggttagcttacgagcaaaccatt
agtgtggggcaagagcttgatttgacggctttaacagaaaaattagttttaatgggttat
cgtcgtgaagggatgatcaccaaaccaggtgagtttagcttgcgcggtagtattattgat
atttatccgttgaccaacgccaatccttatcgaattgatttgtttgatacagaaatcgat
tctttacgaacgtttgatgttgagacccaacgttcacttgagaatgtggatagtttctta
ttaacccctgcaacggatgtcgtggtgacaaaagaagaattagcagttgcttcagaaaaa
ttacgtaagaaagtcgcaaaacaagcggctgtcatgagtgatcctgacgataaagggtta
tttatggcttattttgacgatttagcaagtgagtggagtcagggtcatccaaccgaatcg
attcgccaatggttagaagtagtttatccagaaaaaatcaccttacttgattatttagag
atagacgaccagttaatctttgatgattacgcgcgtattttagaagtcgaaaaagaattg
gtagtggaagaagccgagtggcaggcgatgaaactacaagaagtccgcatgttaacggat
atttcgtttggacaagatattcgcaagttaatcaaacaagaacgcatctcgcaatcattt
ttatcgttgttccaaaaaggcatgggccgcatgaagtttaaagctgtcacaagtttcgag
tgccgcgccatgcaacaatttttcggtcaaatgccgcttttaaaagaagaagttgcgaat
tggcataagaaaaaagaaacagtaattattttggcatctgatgaagagaagagccaaaaa
ctgctagagatgatggaagattatgatattccggttgtcgtgcaacatcacggtgaaatc
atcgaagggcaaacccaaattcgtctgggagcattacaaaatggttttgagtggattgat
gaaaaactagtaatcgtcacggaaaaagaattactaaaaaccgttaagcgtaaacgcgca
cgtcgtcaaacgatttcgaatgccgaacgtttacgtagctataatgaattaaaagttggc
gactacgtggtacacgttaaccacggaattggtaaatatgtcggtatggaaaccttggtc
agcggaggtgttcatcaagactacatctcgattttgtatcaaaacaatgacaaattattc
attccagttactcaacttgatttgattcaaaaatacgtcgcttctgaatcgaagtcccct
aagattaacaaattaggcggtaacgaatggacgaagactaagaaaaaagttgccggcaaa
gtcgaagatattgctgatgacttaattaaactttacgcagcgcgtgaggcagaaaaaggt
tttgctttttccccagacgatagtttgcaaaaagaatttgaagatgctttcccctattct
gaaacagaagatcaattgcgtagtattcaagaaattaaaaaagatatggaaaaggctaaa
ccaatggatcgtctattagtaggtgatgtgggatatggtaaaacagaagttgctattcgt
gcagcgtttaaagctattcgcgataataaacaagtggcggttctcgtaccaacgacggtt
ttagcacaacaacattatgaaacgatggtcgatcgtttccgtgatttccctgtttgtgtc
ggcttattgagtcgttttagaagtaagaaacaacaagaagaaacgattgaacaattgaaa
aaaggccagttagatatcgtggtcggtacccatcgtgtgttatcgagcgatattgaattt
caagatttaggtctgcttgtgattgatgaagaacaacgttttggagtgaaacacaaagaa
cgtctaaaacaattgcgtaaacaagttgacgtcttaactttaacggcgaccccaattcca
agaacgttacacatgtcaatgcttggggtgcgtgatttgtcggttattgaaaccccgcct
tcaaaccgttatccggttcaaacttacgtcatggaagaaaacttcggggcgattcgtgac
ggaattgaacgagagatggcacgtggcggacaagttttctatctacacaaccgtgtcgat
accatcgaacaaaaagttggggaactacaagcgttagtgccggatgctagaattgcgcat
gcgcatgggcaaatgtcggaagtgcaattagaaaacgtcttaatggactttatcgatggt
gcgtatgatgtcttagtgacaacgacgattatcgaaacgggcattgatattcctaacgct
aatacgctatttgttgaaaatgctgaccatatgggcttatcgcaactgtatcaattacga
ggacgtgttggtcgtagtaatcgtgttgcctatgcgtactttatgcatgccccgcaaaaa
atattgagtgaagtcggcgagaagcgcctgcaagccattaaagattttaccgaattaggt
tctggctttaaaatcgcgatgcgcgatttatccattcgtggagcgggtaatttattgggc
gcgcaacaacacggctttatcgacacagtcggttttgatttgtactcacaaatgttagaa
gaagcagtcgctcgcaaacaaggcaaagaagcttcagaatataaaacgtctgttgaaatt
gatttggaattaaacgcttatttaccggaaacttatattagcgatgaacgtcaaaaaatt
gagatatacaaacgagtccgtcaattagaaagtcgtgaaatgtatgatgaattagagggc
gatttaattgaccgattcggtgagtttcctgatgaagtcgtttatttattaacggtcggg
cgcattaagatggacggcgatcgtgcgctaattgattctattcgaaaatctggccaacgt
ttgacgattcgtttaagcaaagtcggttcgaaaacatatatggtggaagatttgtttaaa
gccttaagcgctactaccttgaaatcagacatgggacaagatggtgacgtgatggtcatt
acattaacggttcctaatcaaatgttagaagaagtttggctgaaagaactagcaaaattt
gttgaagcgttacgtaaacaacgtttgaccaaagaagcgtcagcttag
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