Variovorax paradoxus S110: Vapar_0153
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Entry
Vapar_0153 CDS
T00916
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vapar_0153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vap03019
]
Vapar_0153
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_0153
Enzymes [BR:
vap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vapar_0153
Messenger RNA biogenesis [BR:
vap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Vapar_0153
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Vapar_0153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACS16816
UniProt:
C5CX12
LinkDB
All DBs
Position
1:complement(153937..155838)
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AA seq
633 aa
AA seq
DB search
MSSLAPLPLDAPGSSSAPADILHEVFGYSQFRGPQQDIVEHVVAGGDALVLMPTGGGKSL
CYQIPAIARQRAGRGVSVVVSPLIALMHDQVGALHEAGVNAAFLNSTLDWEQTQDVERRM
LRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEAHCVSQWGHDFRPEYRALTV
LHERYPGVPRIALTATADALTRADIVERLQLEEARQFVSSFDRPNIRYTIVEKKDATTQL
LRFIEREHEGDAGVVYCQSRKRVEDVAVMLKGAGINALPYHAGLDAAVRQKHQDRFLREE
GVVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRAGRDGAPADAWMAYGLQDVV
NQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLLGYFGEKSTPCGNCDNCLNP
PQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGKETEKVKQFGHERISTFGIGA
EFSEVQLRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVLKGEANVTLRESVSSPAARGG
KPRREKAARGAPSPAAAALDADGQKRFEALKAWRAEVAREHNLPAYVIFHDATLAAIAER
APATLEDLQGISGIGTKKLEAYGAEVLRVCSAF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcgctcgctccccttcccctcgacgcccccggcagcagcagcgcacccgccgac
atccttcacgaagtcttcggctattcgcagttccgcgggccgcagcaggacatcgtcgag
cacgtggtggccggcggcgacgcgctggtgctgatgcccacgggcggcggcaagtcgctg
tgctaccagatcccggccattgcgcggcagcgcgcggggcgcggcgtctcggtggtggtg
tcgccgctgatcgcgctgatgcacgaccaggtcggcgcgctgcacgaggccggggtgaac
gcggccttcctgaattcgacgctcgactgggagcagacgcaggacgtcgagcgccgcatg
ctgcgcggcgagatcacgctgctgtacgcggcgcccgagcgcgtgaacacgccgcgcttt
ctctcgcagctcgattcgctgaaggagcgcggcaagctctcgctgttcgcgatcgacgag
gcgcattgcgtgagccagtggggccacgacttccgccccgaataccgcgcgctcacggtg
ctgcacgagcgctacccgggcgtgccgcgcatcgcgctcaccgccacggccgatgcgctc
acgcgcgccgacatcgtcgagcggctgcagctggaggaggcgcgccagttcgtctccagc
ttcgaccggccgaacatccgctacaccatcgtcgagaagaaggacgcgaccacgcagctg
ctgcgcttcatcgagcgcgagcacgaaggcgatgcgggcgtggtctattgccagtcgcgc
aagcgcgtggaagacgtggccgtgatgctgaagggcgcgggcatcaacgcgctgccctac
cacgcgggcctggacgcggcggtgcgccagaagcaccaggaccggttcctgcgcgaagaa
ggcgtggtgatggtcgcgaccattgccttcggcatgggcatcgacaagcccgacgtgcgc
tttgtcggccacctcgacatgcccaagaacatcgagggctactaccaggaaaccggccgc
gcgggccgcgacggcgcaccggccgatgcctggatggcctacggcctgcaggacgtggtg
aaccagcgccgcatgatcgacgagagccccgcgggcgaagagttcaagcaggtgatgcgc
ggcaagctcgacgcgctgctctcattggccgaggcaagcgactgccgccgcgtgcgcctc
ctgggctacttcggcgagaagagcaccccctgcggcaattgcgacaactgtttgaaccca
ccgcaggtgtgggatggcaccgatgccgcgcgcaagctgctctccaccatctaccgcgtg
cagcagctgagcggcatcagctttggcgcgggccacatcatggacatcctgcgcggcaag
gaaaccgagaaggtcaagcagttcgggcacgagcgcatcagcaccttcggcattggcgcg
gagttcagcgaagtgcagctgcgcggcgtgctgcgccagctcatcgccacgggcgcgctg
gcggtcgatgcggaagccttcaacacgctgaagcttacggaaggctcgcgcgcggtgctc
aagggcgaagcgaacgtgacgctgcgcgagtcggtttcgtcgccggccgcgcgcggcggc
aagccccggcgcgaaaaggcggcgcgcggcgccccgtctccggcggccgcggcactcgat
gccgacggccagaagcgcttcgaggcgctcaaggcctggcgcgcggaagtggcgcgcgag
cacaacctgccggcctacgtgatcttccacgacgccacgctggcggccattgccgagcgc
gcgcccgcgacgctcgaagacctgcagggcatcagcggcatcggcaccaagaagctcgag
gcctacggcgccgaggtgctgcgcgtctgcagcgcgttctag
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