Variovorax paradoxus S110: Vapar_0466
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Entry
Vapar_0466 CDS
T00916
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
vap
Variovorax paradoxus S110
Pathway
vap02020
Two-component system
vap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Vapar_0466
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Vapar_0466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vap03021
]
Vapar_0466
Transcription machinery [BR:
vap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Vapar_0466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
DUF2344
HTH_23
HTH_5
Motif
Other DBs
NCBI-ProteinID:
ACS17129
UniProt:
C5CJC9
LinkDB
All DBs
Position
1:508288..509880
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AA seq
530 aa
AA seq
DB search
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG
LDAIDTPVPRDEAGEAAEGEFSSAPASSTTSTSSETASTAESEVPAADATEREPDWEGDG
TVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSLRLNENDSAA
LRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDELVHHFQVALGLLQSLEPAGVGARDL
GECLCIQLRALASESETEEQALVRKTAIAICKQPMELLARRDFKRLATLTRTNEELVRSA
LQVISRLEPKPGRRFVDVERNIVIPDVIVTKIGRGTNAKFRVMLNPEVMPRLRVHDIYAG
ALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSFFVHGELAMRPLV
LREIADELGLHESTISRVTTAKYMSTPFGTVELKYFFGSALGTETGGNASSTAVRALIKQ
FVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaagggctgtcccttcgcgtttcgcagcacctggcgctcacgccccaactgcag
cagtcgatccggctgctgcagctgtccacgctcgaactgagccaggaagtggagcagatg
ctggacgagaacccgttcctcgaacgcaccgcggaagaagccgcgcgcgaggaattcggg
ctcgacgccatcgacacgccggtgccgcgcgacgaggccggtgaagccgccgagggcgaa
ttcagctcggccccggccagcagcacgaccagcacttcgagcgaaaccgcctccacggcc
gagtccgaggttcccgccgccgacgccaccgagcgcgagcccgactgggaaggcgacggc
accgtcgacatggcgcccgacgacagcgaatggggcagcgatgcccccgcgcgccagaac
aacctgggcgacgacgagcgcgccgacgccaccgagctcgcgcgcagccaggagtcgctg
cagtccttcctgcaccggcaggcgctgagcctgcggctcaacgagaacgacagcgccgcg
ctgcgcttcctgatcgaatcgctcaacgacgacggctacctggaggattcgctgccggcg
ctggcctcgggcctcgcgggcgacgacaacgaccagttcgacgagctggtgcaccacttc
caggtggcgctcggcctgctgcagagcctggagccggccggcgtcggcgcgcgcgacctg
ggcgaatgcctttgcatccagctgcgcgcgctcgccagcgaaagcgagaccgaggaacag
gcgctggtgcgcaagaccgccatcgcgatctgcaagcagccgatggagctgctcgcgcgg
cgcgacttcaagcgcctggccacgctcacgcgcaccaacgaagagctggtgcgctcggcg
ctgcaggtcatctcgcgcctggagcccaagccgggccgccgttttgtcgatgtcgagcgc
aacatcgtgattcccgacgtgatcgtcaccaagatcggccgcggcaccaatgccaagttc
cgcgtcatgctcaatcccgaggtgatgccgcggctgcgcgtgcacgacatctatgccggc
gcgctcaagtcgcacaagggcgagggcagccaggcgctgtcgcagcggctgcaggaggcg
cgctggttcatcaagaacatccagcagcgcttcgacaccatcctgcgcgtgagcaacgcc
atcgtcgagcggcagaagagcttcttcgtgcacggcgagctcgcgatgcggcccctggtg
ctgcgcgagattgccgacgaactgggcctgcacgaatcgaccatctcgcgcgtgaccacg
gccaagtacatgtccacgcctttcggcacggtcgagctcaagtacttcttcggctcggcg
ctcggtaccgagaccggcggcaatgcgtcgagcaccgcggtgcgcgcgctgatcaagcag
ttcgtgagctccgagagcatcaagaagccgctgtccgacagccagatctccgagatgctc
aaggagcagggcatcgagtgcgcgcgccgcaccgtggccaagtaccgcgaggccctgcgc
atcgcgccggccaacctccgcaaggcgctgtag
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