Variovorax paradoxus S110: Vapar_0498
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Entry
Vapar_0498 CDS
T00916
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Vapar_0498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_0498
Enzymes [BR:
vap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Vapar_0498
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Vapar_0498
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACS17161
UniProt:
C5CJG1
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All DBs
Position
1:538471..539367
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AA seq
298 aa
AA seq
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MATAQKAPRITHAERLIDAASGLTKGDLAAYYARVAPLMLPHLEGRPVALVRAPDGVGGE
LFFQKHAQHSDIAGIKLLDPALDPGHDPLLQIDTAEALVGAAQFNTVELHTWNATSRALG
KPDRMTFDLDPGEGIDWQQMQEAALLVRVLLDELGLPSFLKTSGGKGLHVVVPLRRQFGW
DEVRGFSRAIVEHLARTVPERFVAKSGPRNRVGRIFADYLRNGFGATTVSAWSARARPGM
GVSVPLAWEELPDLDSAAHWTVANIGPRLATGNTPWDAMERSRTGLRAAMQMLGFLPA
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggccacggcgcagaaggcgccgcgcatcacccacgcggagcgcctgatcgacgccgcc
agcggcctcaccaagggcgatctcgcggcctactacgcgcgcgtcgcgccgctgatgctg
ccgcacctcgaagggcggccggtggcgctggtgcgcgcgcccgacggcgtgggcggcgag
ctgttcttccagaagcatgcgcagcacagcgacatcgcgggcatcaagctgctcgatccc
gcgctcgacccgggccacgacccgctgctgcagatcgacaccgcagaggcgctggtcggc
gcggcgcagttcaacaccgtcgagctgcacacctggaacgccacctcgcgcgccctcggc
aagcccgaccgcatgaccttcgacctcgaccccggcgaaggcatcgactggcagcagatg
caggaggcggcgctgctggtgcgcgtgctgctcgacgagctcggcctgccgtcgttcctc
aagaccagcggcggcaaggggctgcacgtggtggtgccgctgcggcgccagttcggctgg
gacgaggtgcgcggcttctcgcgggccatcgtcgagcacctggcgcgcaccgtgcccgag
cgcttcgtggccaagagcgggccgcgcaaccgcgtgggccggatcttcgcggactacctt
cgcaacggcttcggcgccaccaccgtgagcgcatggtcggcgcgcgcgcggccgggcatg
ggcgtgtcggtgccgctcgcctgggaagagctgcccgacctggacagcgccgcccactgg
acggtggcgaacatcggcccgcgcctggccaccggcaacacgccctgggacgcgatggag
cgcagccgcaccggccttcgcgccgcgatgcagatgctcggcttcctgcccgcgtag
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