KEGG   Variovorax paradoxus S110: Vapar_0580
Entry
Vapar_0580        CDS       T00916                                 
Name
(GenBank) uracil-DNA glycosylase
  KO
K03648  uracil-DNA glycosylase [EC:3.2.2.27]
Organism
vap  Variovorax paradoxus S110
Pathway
vap03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Vapar_0580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vap03400]
    Vapar_0580
Enzymes [BR:vap01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.27  uracil-DNA glycosylase
     Vapar_0580
DNA repair and recombination proteins [BR:vap03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Vapar_0580
 Prokaryotic type
     Vapar_0580
SSDB
Motif
Pfam: UDG
Other DBs
NCBI-ProteinID: ACS17243
UniProt: C5CKE5
LinkDB
Position
1:634542..635261
AA seq 239 aa
MSRPDQLASSDPADWPVAPGWRPLVDGFFAGIVGQKLLGFLRERLDAGAVIFPPQPLRAL
ELTPPEDVRVVILGQDPYHGRGQAEGLAFSVAPGVALPPSLRNIFKELQRDLGTAPPPFP
NPGGSLVKWATHGVLLLNTCLTVEEGQPASHSGRGWEVLTDAVIRHVSDSDKPVVFMLWG
SHAQSKRALIDIGRHKVLMSNHPSPLSALRPPVPFIGCGHFGEARAWRLAHQPGGEIHG
NT seq 720 nt   +upstreamnt  +downstreamnt
atgagccggcccgatcagctggcgagcagcgatccggccgactggcccgtcgcgccgggc
tggcggccgctggtggacggcttctttgccggcatcgtgggccagaagctgctcggtttc
ctgcgcgagcgcctcgatgcgggcgccgtcatcttcccgccgcagccgctgcgggccctg
gagctgacgccgcccgaggacgtgcgcgtcgtcatcctgggccaggacccgtaccacggc
cgcggccaggccgaagggctcgcattctcggtggcgcccggcgtggcgctgccgccgtcg
ctgcgcaacatcttcaaggagctccagcgcgacctgggaacggcgccgccgccattcccg
aacccgggcggcagcctggtgaagtgggccacccacggcgtgctgctgctcaacacctgc
ctcacggtcgaagaagggcagccggccagccattcaggtcgcggatgggaggtgctgacc
gatgccgtcatccgccatgtatcggacagcgacaaacctgttgtttttatgctctgggga
tcgcacgcccaaagtaagcgtgcgttgatcgacattggccgccataaggtgctgatgtcg
aatcatccgtcgccgctttcggccttgcgcccgcccgttccgttcatcggctgcggccac
ttcggcgaggcgcgcgcctggcggctcgcgcaccagccgggcggcgaaattcacggataa

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