Variovorax paradoxus S110: Vapar_0917
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Entry
Vapar_0917 CDS
T00916
Name
(GenBank) UDP-N-acetylmuramoylalanine/D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00470
D-Amino acid metabolism
vap00550
Peptidoglycan biosynthesis
vap01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Vapar_0917
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Vapar_0917
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vap01011
]
Vapar_0917
Enzymes [BR:
vap01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
Vapar_0917
Peptidoglycan biosynthesis and degradation proteins [BR:
vap01011
]
Precursor biosynthesis
Amino acid ligase
Vapar_0917
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Sacchrp_dh_NADP
AlaDh_PNT_C
NAD_binding_8
Motif
Other DBs
NCBI-ProteinID:
ACS17568
UniProt:
C5CNF2
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All DBs
Position
1:1009192..1011315
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AA seq
707 aa
AA seq
DB search
MRHLKDLPVLILGLGASGLAMARWCARHGAVVTVADTREAPALLATLRAEWPEVAFIGGP
FSAALVEGTPIRAVYRSPGLSPATIAPVVDAARAVGLAVGGELDLFARALLDLRTVEVPV
AEAAPEVPEDEPAVEVPAEPVAEPDAQGELPLAGEPAEAADAAAPEEPATPEMPQAAEPV
ADAAADAAEAEPAPPAAQAEAMPRDPSLSVPAAPPPGDEQQPAQEQAPAAETQDAAEPAP
APASAPATVSRLPTPGQPYVPTAAREAAEFVAKIAELSATNPASAAVEEEDTPQLKLVPI
EEPPAPRGYTPAVLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTLAAHIDA
ETLPDVWVLELSSFQLDGVQGFEPTAATVLNLTQDHLDWHGDMQAYASAKARIFGTQGLM
VLNRDDPGVMAMLPAPVKVKLQRPQVRAHVTFGASMPLRPGDYGIERVNGMAWLVRALEA
DETQKRKRGAVVEEEIFLQRLLPADVLRIRGRHNAMNALAALALASAAGCPLGPMLYGLR
EYRGEPHRVEPIAIVDEVEYFDDSKGTNVGATVAALNGLGEDRRVVVILGGEGKGQDFEP
LAAPVAQYARAVVLIGRDAPLIEQALAATGASLMHAGSMQEAVKLAAARANPGDAVLLSP
ACASFDMFKDYEHRAAVFREAVQALEDEPRMAGPSSNDADFSSGGPA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgcggcacctgaaagacctccccgtattgatcctcggcctcggtgcgtccgggctggcg
atggcgcgctggtgcgcgcgccacggcgcggtcgtcacggtggccgacacgcgcgaggcg
ccggcgctgcttgcgacgctgcgggcggaatggcccgaggtggcgttcatcggcgggccg
ttctcggccgcgctggtcgaaggcacgccgatccgcgcggtgtaccgctcgccgggcctg
tcgcccgccaccatcgcaccggtcgtcgatgcggcgcgggccgtggggctcgcggtcggc
ggcgaactggatctgtttgcgcgcgcgctgctggacctgcggaccgtcgaggtgccggtg
gccgaggcggcgcctgaagtgccggaagacgagcctgcggtggaggtgccggcggagccc
gtcgcggaacccgatgcgcaaggcgaattgccgctcgctggtgagccggcggaagctgcg
gacgccgcggcaccggaagagccggcaacgcccgagatgccgcaagcggccgagcccgtg
gccgatgccgctgccgatgcggcagaagccgagcccgcaccgcccgccgcgcaggccgaa
gccatgccgcgcgacccgtcgctgagcgttcccgccgcgccgccgccaggcgacgagcaa
cagccagcgcaggagcaggcgccggcagccgagacgcaggacgccgccgaaccggcaccc
gcgcccgcgtccgcgcctgccaccgtgtctcgcttgccgacccccggccagccctacgtc
cccacggccgccagggaggccgccgagttcgtcgccaagatcgccgaactctccgccacc
aacccggcctccgccgcagtcgaggaagaagacacgccgcagctcaagctcgtgccgatc
gaggagccgccggcgcccaggggctacacgcccgcggtgctcgccgtcaccggcaccaac
ggcaagactaccgtcaccgcgctcaccggccagctggtcgagcgcgcgggcaagagcgtg
gccgtggccggcaacatcggcccgacgctgctcgacaccctggccgcacacatcgatgcc
gagacgctgcccgatgtctgggtgctcgagctctcgagcttccagctcgacggcgtgcag
ggcttcgagccgactgccgccaccgtgctcaacctcacgcaggaccatctcgactggcat
ggggacatgcaggcgtatgcatcggccaaggcgcgcatcttcggcacgcagggcctcatg
gtgctcaaccgcgacgaccctggcgtgatggccatgctgcccgcgcccgtcaaggtgaag
ctgcagcgcccgcaggtccgcgcccatgtcaccttcggcgcgtcgatgccgctgcgtccg
ggcgactacggcatcgagcgcgtcaacggcatggcctggctggtgcgcgcactcgaggcc
gacgaaacgcagaagcgcaagcgcggcgcagtggtcgaggaagaaatcttcctgcagcgc
ctgctgcccgccgacgtgctgcgcatccgcggccgccacaacgcgatgaacgcgctggcg
gcgctcgcgctggccagcgccgccggctgcccgctcgggccgatgctctacggcctgcgc
gaataccgcggcgagccgcaccgcgtggagccaatcgccatcgtcgatgaggtcgagtac
ttcgacgacagcaagggcaccaacgtcggcgcaacggtcgccgcgctcaacggcctgggc
gaagaccgccgcgtggttgtgatcctcggcggcgagggcaagggccaggacttcgaaccg
ctggccgcgcccgtcgcgcagtacgcgcgcgccgtggtgctgatcggccgcgatgcgccg
ctgatcgagcaggcgctggccgccaccggcgcctcgctgatgcatgcgggctcgatgcag
gaggccgtcaagctggccgccgcgcgcgccaaccccggcgatgccgtgctgctgtcgccg
gcctgtgcgagcttcgacatgttcaaggactacgagcaccgcgcggccgtgttccgcgag
gccgtgcaggcgctcgaggacgagcctcgcatggccggcccgtcgtcgaacgatgccgat
ttttcttcgggaggtccggcttga
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