Variovorax paradoxus S110: Vapar_0937
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Entry
Vapar_0937 CDS
T00916
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vap03016
]
Vapar_0937
Enzymes [BR:
vap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Vapar_0937
Transfer RNA biogenesis [BR:
vap03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Vapar_0937
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ACS17588
UniProt:
C5CNH2
LinkDB
All DBs
Position
1:complement(1029378..1031438)
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AA seq
686 aa
AA seq
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MFVLFEEAGKYLGGRVLSEAEASAQVELDTGKRVKVKGANIVLRFEKPAPAELIVEARAL
AATMDLDLAWEFAPEGEFGFADLASDYFSDKPTLAQQAAALFALFEAPHYFRRAGKGRFK
KAPAEILQQALAAIEKKKVVQAQIVEWAAQLAEGICPQPIREQLYKILFKPDKNAPEYKA
VVDAARATQRPPLELLERAGAIDSPYQFHWRRFLFENFPKGTGFPALAAPPIVDDLPLAE
GVQAFSIDDSQTTEIDDALSVQGLGSGTVTVGIHIAAPGLALTPGSAIDQVARARMSTVY
MPGHKITMLPDEVVSTYTLLEGGDRPAVSLYARFDETTLELQSTETKLERVPIVANLRHD
QLDAVVTQPWLEDASFTSENTPEAAAKLRAPLSFLFRLAKQLKAQREVVRGKPENFNRPD
YNFRLVGNDGEPNGSEQVQITTRQRGAPLDLIVSEAMILANSSWGGWLGELGVPGLYRSQ
ASLAPGIKVRMGTRALPHAGLGVKSYAWSTSPLRRYTDLVNQWQIIAAARHGKTAALAAP
FKPKDADLFSILSGFDAAYATYNAYQGGMERFWTLKYLEQQGITELEATVIKDIPNGALV
RADTLPLVFPVAGQQERGARLRVKLGEIDEIALDVHGTVLERLDAPKADAAAEEEGGDEE
VEEVAGPIAIAVDLSDSEAAPENTPA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtattgtttgaagaagccggcaagtacctcggcggccgcgtgctgtcggaggcc
gaagcatcggcgcaggtcgagctcgacaccggcaagcgcgtcaaggtcaagggcgccaac
atcgttctgcgtttcgagaagccggccccggccgagctgatcgtcgaggcgcgcgcgctc
gcggccacgatggacctcgacctggcctgggaattcgcgccggagggcgaattcggcttt
gccgatctcgcatccgactatttcagcgacaagcccacgctcgcgcagcaggccgcggcg
ctgttcgcgctgttcgaggcgccgcactacttccgccgcgcgggcaaggggcgcttcaag
aaggcaccggccgagatcctgcagcaggcgctggccgccatcgagaagaagaaagtggtg
caggcgcagatcgtcgaatgggccgcccagctggccgagggcatctgcccgcagccgatc
cgcgagcagctctacaagatcctgttcaagcccgacaagaacgcgcccgaatacaaggcc
gtggtcgacgccgcgcgcgccacccagcgcccgccgctcgaactgctggaacgcgccggc
gccatcgactcgccctaccagttccactggcggcgcttcctgttcgagaattttcccaag
ggcacgggcttcccggcgctcgccgcgccgcccatcgtggacgacctgccgctggccgaa
ggcgtgcaggcgttctcgatcgacgactcgcagaccaccgaaatcgacgacgcgctgtcg
gtgcagggccttggcagcggcaccgtcacggtcggcatccacattgccgcgcccggcctg
gcgctgaccccgggcagcgccatcgaccaggtggcgcgcgcgcgcatgtccacggtctac
atgccgggccacaagatcaccatgctgcccgacgaagtcgtgagcacctacacgctgcta
gaaggcggcgaccggccggcggtgtcgctctacgcgcgcttcgacgagaccacgctcgag
ctgcagtcgaccgagacgaagctcgaacgcgtgccgatcgtggccaacctgcggcacgac
cagctcgacgccgtggtcacgcagccctggctcgaagacgcctcgttcacgagcgagaac
acgcccgaagccgctgcgaagctgcgcgcgccgctctcgttcctgttccgcctcgccaag
cagctgaaggcccagcgcgaagtggtgcgcggcaagcccgagaacttcaaccggcccgac
tacaactttcgcctcgtgggcaacgacggcgaaccgaacggcagcgaacaggtgcagatc
accacgcgccagcgcggcgcaccgctcgacctgatcgtgtccgaggccatgatcctggcc
aacagcagctggggcggctggctcggcgaactcggcgtgcccgggctctaccgcagccag
gccagcctggcgcccggcatcaaggtgcgcatgggcacgcgggccttgccgcatgcgggc
ctgggcgtgaagagctatgcctggagcacctcgccgctgcgccgctacaccgacctcgtg
aaccagtggcagatcattgccgccgcgcgccacggcaagaccgccgcgctggccgcgccg
ttcaagcccaaggatgcggacctgttctccattctctcgggcttcgatgctgcctacgca
acctacaacgcctaccagggcggcatggaacgcttctggacgctcaagtacctggagcag
caaggcatcaccgagctcgaggcgaccgtcatcaaggacattccgaacggtgccctggtg
cgcgcggacaccctgccgctggtgttcccggtggcgggccagcaggagcgcggcgcgcgc
ctgcgcgtgaagctcggcgagatcgacgagatcgcgctcgacgtgcacggcaccgtgctc
gagcgcctcgatgcgcccaaggccgatgccgcggccgaggaggaaggcggcgacgaggaa
gtggaagaagtcgccggccccatcgccattgcagtcgacctcagcgacagcgaggcggcc
ccggaaaacacgccggcatga
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