Variovorax paradoxus S110: Vapar_1208
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Entry
Vapar_1208 CDS
T00916
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03410
Base excision repair
vap03430
Mismatch repair
vap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Vapar_1208
03430 Mismatch repair
Vapar_1208
03440 Homologous recombination
Vapar_1208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_1208
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Vapar_1208
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Vapar_1208
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Vapar_1208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Phage_Mu_Gp37
Motif
Other DBs
NCBI-ProteinID:
ACS17859
UniProt:
C5CQN3
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All DBs
Position
1:complement(1320465..1322186)
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AA seq
573 aa
AA seq
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MKIIAREIPPRTVWALEQAGVHPLLARLFAARGVLAKDELDDGLARLLPPDTLHGTREAA
VLLADAMAQDKRLCIVADYDCDGATACAVAVRGLRLLGAKNVSYLVPDRVVDGYGLTPPI
AERVADSGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPAADVLVNPNQPG
CSFESKSIAGVGVMFYVLLALRSELRARGVFSAAAQPKLDVLLPLVALGTVADVVKLDAN
NRRLVAQGLRRIRAGALPAGIAALFKAAGRNAAVATTFDFGFALGPRINAAGRLADMTLG
IECLLTDDAGRADELARMLDGINRERRDIEGGMRDQALLLAESLFGATADGSEAPPAAIS
VFDADFHEGVVGIVASRIKDRFHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV
AKRHPGVLLRFGGHAMAAGCTVAREKFEVFERALAEVAHEWLAASALTRQIETDGPIARE
YMRIDLVDTLHREVWGQGFAPPTFSEEVEVVSQRLVGEKHLALKLRHQGQPVDGIWFGHT
EPLPARVKLAFRLDADEWQGVRRVRFLVEGAEI
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatcattgcccgcgaaattccgccccgcacggtctgggcgctcgagcaggccggc
gtgcatccgctgctggcccgcctgttcgccgcgcgcggcgtgctggccaaggacgagctc
gacgacggcctggcgcgcctgctgccgcccgacacgctgcacggcacgcgcgaggccgcg
gtgctgctggccgacgcgatggcgcaggacaagcgcctgtgcatcgtggccgactacgac
tgcgacggcgccaccgcctgcgccgtcgcggtgcgcggcctgcgcctgctcggcgcgaag
aacgtgagctacctggtgcccgaccgcgtggtcgacggctacggcctcacgccgccgatt
gccgagcgcgtggccgacagtggcgccgacatgctgatcaccgtcgacaacggcatcgcc
agcgtcgagggtgtggccgccgccaaggcgcgcggcctgcaggtgctggtgaccgaccac
cacctgcccggccccgagctgccggccgccgacgtgctggtgaatcccaaccagcccggc
tgcagcttcgagagcaagagcatcgccggtgtcggcgtgatgttctacgtgctgctggcg
ctgcgctccgagctgcgcgcgcgcggcgtcttcagcgcggccgcgcagcccaagctcgac
gtgctgctcccgctggtggcgctcggcaccgtggccgacgtggtgaagctcgacgccaac
aaccgccgcctggtggcacagggcctgcggcgcatccgcgccggcgcgctgcccgcgggc
atcgcggcgctgttcaaggccgcggggcgcaacgccgcggtggccaccaccttcgacttc
ggctttgcgctcggcccgcgcatcaacgcggccggccggctcgccgacatgacgctgggc
atcgaatgcctgctgaccgacgatgccggccgcgccgacgaactcgcgcgcatgctcgac
ggcatcaaccgcgagcggcgcgacatcgagggcggcatgcgcgaccaggcgctgctgctg
gccgaatcgctgttcggtgccaccgccgacggcagcgaggcgccgcccgcagccatcagc
gtgttcgatgccgacttccacgaaggcgtggtcggcatcgtggcctcgcgcatcaaggac
cgcttccaccgcccgaccttcgtctttgccgccagcggcgcgcccggcaaggagcacgag
ctcaagggctcgggccggtcgatcccgggcttccatctgcgcgatgcgctcgaccttgtg
gccaagcgccatccgggcgtgctgctgcgcttcggcggccatgccatggctgccggctgc
accgtggcgcgcgagaagttcgaggtgttcgagcgcgcgctggccgaggtcgcacatgaa
tggctggccgcctccgcgctcacgcgccagatcgaaacggatgggccgatcgcgcgcgag
tacatgcgcatcgacctggtcgacacgctgcaccgcgaggtgtggggccagggcttcgcg
ccgcccaccttcagcgaggaagtcgaagtggtgtcgcagcgcctcgtgggcgagaagcac
ctggcgctcaagctgcggcaccagggacagccggtcgacggcatctggttcggccacacc
gagccgctgcccgcgcgcgtgaagctcgccttcaggctcgatgccgacgaatggcagggt
gtgcgccgggtgcgcttccttgtcgaaggcgctgagatctag
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