Variovorax paradoxus S110: Vapar_1279
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Entry
Vapar_1279 CDS
T00916
Name
(GenBank) Fmu (Sun) domain protein
KO
K03500
16S rRNA (cytosine967-C5)-methyltransferase [EC:
2.1.1.176
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vap03009
]
Vapar_1279
Enzymes [BR:
vap01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.176 16S rRNA (cytosine967-C5)-methyltransferase
Vapar_1279
Ribosome biogenesis [BR:
vap03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
Vapar_1279
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Methyltr_RsmB-F
RsmF-B_ferredox
MTS
Methyltransf_31
Methyltr_RsmF_N
Ubie_methyltran
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
GCD14
Methyltransf_14
Motif
Other DBs
NCBI-ProteinID:
ACS17930
LinkDB
All DBs
Position
1:1394269..1395540
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AA seq
423 aa
AA seq
DB search
MHPKALLEATADLVGLVLKFDHPADQVVSRFFRDHREFGPRERATLAETVYTVLRKKLLF
DHLSPSGSGSKERRMAILGFHGPRDFLKSALNDTEKRWLDNCDAVKPDDLLERHRHNLPE
WLVGPLKAQLGDGFWALVESLQQPAPLDLRVNALTDKRAEVKAELAKAAIKSEATPFSPW
GLRIDGKPALTKLDAFARGAVEVQDEGSQLLALLLDAKRGEMVVDFCAGAGGKTLAIGAT
MRNTGRLYAFDTSAHRLDALKPRLARSKLSNVHPAAIAHERDDRIKRLAGKIDRVLVDAP
CSGLGTLRRNPDLKWRQSPQSVEELTVKQAAILQSAARLLKSGGRLVYATCSVLPEENEA
IAEAFSAANPDFVPQDAAELLQGLKVEGFEALCAGGADGRRYLRLWPHRHATDGFFAAVW
NRK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgcaccccaaagccctgttggaggccaccgccgatctggtcggccttgtcctgaaattc
gatcacccggccgaccaggtcgtttcgcgctttttccgcgaccaccgcgagttcggcccg
cgcgagcgcgccacgcttgccgaaaccgtctacaccgtgctgcgcaagaagctgctgttc
gaccacctttcgccctcgggcagcggctcgaaggagcgccgcatggcgatcctgggcttt
cacggcccgcgcgacttcctcaagagcgccctcaacgacaccgaaaagcgctggctcgac
aactgcgatgccgtcaagccggacgatctgctcgaacgccatcgccacaacctgcccgaa
tggctggtggggccgctcaaggctcagctgggcgacggtttctgggcgctggtcgaaagc
ctgcagcagcccgcgccgctcgatctccgcgtcaatgcgctgaccgacaagcgcgccgaa
gtcaaggcggagcttgcgaaggctgctatcaaatcggaagcaacgccgttctcgccctgg
ggcctgcgcatcgacggcaagcccgcgctgaccaagctggacgccttcgcccgcggcgcc
gtcgaggtgcaggacgagggttcccaactgctcgcgctgctgctggatgccaagcggggc
gagatggtggtcgatttttgcgccggtgccggcggcaagacgctggccatcggcgcgacc
atgcgcaacaccggccggctctacgccttcgacacctcggcccaccggctcgacgcgctc
aagccgcggctcgcgcgcagcaagctgtcgaacgtgcatccggccgccattgcgcacgag
cgggacgaccgcatcaagcgcctggccggcaagatcgaccgcgtgctggtggacgcgccc
tgctcgggcctgggcacgctgcgccgcaatccggacctgaaatggcgccagtcgccccaa
tcggtcgaggaattgacggtcaagcaggccgccatcctgcaaagcgcggcacgcctgctg
aaatcgggcggacggctggtctatgccacctgcagcgtgctgcccgaggaaaacgaggcc
attgccgaggctttcagcgccgccaaccccgatttcgtgccccaggacgccgcggaactg
ctgcaggggctcaaagtggagggtttcgaggcgctctgcgcaggcggagcggacgggcgg
cgctatctgcggctgtggccgcaccgccacgccacggacggtttctttgccgcggtgtgg
aaccgcaaatag
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