Variovorax paradoxus S110: Vapar_1316
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Entry
Vapar_1316 CDS
T00916
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00061
Fatty acid biosynthesis
vap00071
Fatty acid degradation
vap01100
Metabolic pathways
vap01212
Fatty acid metabolism
vap02024
Quorum sensing
vap04146
Peroxisome
Module
vap_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Vapar_1316
00071 Fatty acid degradation
Vapar_1316
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Vapar_1316
09145 Cellular community - prokaryotes
02024 Quorum sensing
Vapar_1316
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vap01004
]
Vapar_1316
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vap04147
]
Vapar_1316
Enzymes [BR:
vap01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Vapar_1316
Lipid biosynthesis proteins [BR:
vap01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Vapar_1316
Exosome [BR:
vap04147
]
Exosomal proteins
Exosomal proteins of breast milk
Vapar_1316
Exosomal proteins of breast cancer cells
Vapar_1316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
CbtB
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
ACS17967
UniProt:
C5CRN5
LinkDB
All DBs
Position
1:1433936..1435450
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AA seq
504 aa
AA seq
DB search
MSEMPAPTRIHELLEARALQSPGDAFLFEPSGTVSYGALQAMAEAAAQDLLAAGVRPTDR
VLLVAENCAAHIALIMACSRIGAWSCGVNARMSPGEVAAIAERADARLCCFTTDASDAAR
QHAQRAGAVPSALPGVMRSAMRAEARPEADPALADTAAIIFTSGTSGTPKGVMVSHRGLL
HFGRVSAGVRALGAHDRVYAFLPMTHIFGIGTVLMAALTGGAALVLRASFSPADMLHALA
HEEVSNLLGPPTMYARLLAHIEANHGAPRFPALRYVYTGSAPLDPALKQRVEALFGQPLH
YGYGLSEYAGSVFLTRVEAPRADTAAGHVVEGGEARIVGPDGQDLAPGETGEIWLRGPGL
MLGYFRDAAATAQVMRPGGWYASGDLGRFDADGALFVVGRLKEMIIRSGFNVYPAEIEAV
IGRFAGVHLCAVVGVPEADGNERIVAFVEMKPGAVLDEPALRAYLAEHLSPYKRPARIET
VDAMPTTANGKLLKRELQARAARP
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaatgccggcacccacgcgaatccacgagctgctcgaagcgcgcgcattgcag
tcgccgggcgacgcctttctcttcgaaccatcgggcaccgtctcgtacggcgcgctgcag
gccatggccgaggcggccgcgcaggacctcttggccgccggcgtgcggccgaccgaccgc
gtgctgctggtggccgagaactgcgccgcgcacattgcgctcatcatggcgtgcagccgc
atcggcgcatggtcgtgcggggtcaatgcgcgcatgtcgcccggcgaggtcgcggccatt
gccgagcgcgccgatgcgcggctgtgctgcttcaccaccgatgcctcggacgccgcgcgg
cagcatgcccagcgcgccggcgcggtgccctcggcgctgccgggcgtgatgcgctcggcc
atgcgcgccgaggccaggccagaggccgatcccgcgctcgcggataccgcggccatcatc
ttcacttcaggcacctcgggtacgccgaagggcgtgatggtgtcgcaccgcgggctgctg
catttcggccgcgtgtcggccggcgtgcgggcgctgggcgcgcacgaccgggtctacgcc
ttcctgccgatgacgcacatcttcggcatcggcacggtgctcatggccgcgctcacgggc
ggcgcggcgctggtgctgcgcgcgagcttctcgccggccgacatgctgcatgcgctggcg
catgaagaggtgtccaacctgctcgggccgcccacgatgtatgcgcggctgctggcccac
atcgaggccaatcacggtgcgccgcgctttccggcgcttcgctatgtctacaccggctcg
gcgccgctcgatccagcgctcaagcagcgcgtcgaggcgctgttcggccagccgctgcac
tacggctatggcctctcggagtacgcgggctcggtgttcctcacgcgcgtggaggcaccg
cgtgcggacacggccgcgggccatgtggtcgagggcggcgaggcgcgcatcgtggggccc
gatggccaggacctggcgccgggcgagaccggcgagatctggctgcgcgggcccggcctc
atgctgggctacttccgcgatgcggcagccacggcgcaggtcatgcgccccggcggctgg
tatgcgagcggcgacctcgggcgcttcgatgcggacggtgcgctgttcgtggtcggccgg
ctcaaggaaatgatcatccgctcgggcttcaacgtctatccggcggagatcgaggcggtg
atcggccgctttgcgggcgtgcacctttgcgcggtggtgggcgtgcccgaggccgacggc
aacgagcgcatcgtcgccttcgtcgagatgaagcccggcgccgtgctcgatgaaccggcg
ctgcgcgcctacctcgcggagcacctgtcgccctacaagcggcccgcgcgcatcgagacc
gtcgacgccatgccgaccacggccaacggcaagctgctcaagcgcgagctgcaggcgcgc
gccgcccggccctag
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