Variovorax paradoxus S110: Vapar_1402
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Entry
Vapar_1402 CDS
T00916
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vap03019
]
Vapar_1402
03009 Ribosome biogenesis [BR:
vap03009
]
Vapar_1402
03036 Chromosome and associated proteins [BR:
vap03036
]
Vapar_1402
Enzymes [BR:
vap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Vapar_1402
Messenger RNA biogenesis [BR:
vap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Vapar_1402
Ribosome biogenesis [BR:
vap03009
]
Eukaryotic type
90S particles
RNase
Vapar_1402
Prokaryotic type
rRNA processing factors
Vapar_1402
Chromosome and associated proteins [BR:
vap03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Vapar_1402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
PAZ_2
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
ACS18053
UniProt:
C5CSF5
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All DBs
Position
1:1525082..1525768
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AA seq
228 aa
AA seq
DB search
MDGGLTALQERLKHSFSDTRLLQLALTHRSFSADHNERLEFLGDSVLNLAVSHLLYTRLS
ALPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIG
AVYLDAGFSAAEALVRRLYESVEINPRMDAVAKDPKTELQEWLQGHKMKLPVYRVAATLG
AAHKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIRLKARGAA
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
gtggacggcggcctcacggcgctgcaggagcgcctcaagcattcgttctccgacacgcgg
ctgctccagctcgcgctcacgcaccgcagtttttcggccgaccacaacgagcgcctcgaa
tttctcggcgactcggtgctcaacctcgcggtctcgcacctgctctacacccgcctctcg
gccctgcccgagggcgacctgtcgcgcgtgcgggccaacctggtcaagcaggacaccctg
caccgcctggcgctggaactgcagctgtcgccgctgctgcggctcggcgagggcgaggcg
cgctccggcgggcccaaccggccctcgatcctggccgacgcgctcgaggcgctgatcggc
gcggtctacctcgacgccggcttttcggccgccgaggcgctggtgcggcggctctacgaa
tcggtcgagatcaatccgcgcatggacgcggtggccaaggatccgaagaccgaattgcag
gaatggctgcagggtcacaaaatgaagctgccggtgtaccgcgtggcggccacgctcggc
gcagcgcacaagcagaccttcgatgtcgagtgcgaggtgccggagctgggcctgcgcgaa
cgcggcatcggtggttcgcggcgcgccggcgagcaggctgccgcggcggccatgttgatc
cggctcaaggcacgcggggccgcgtga
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