Variovorax paradoxus S110: Vapar_1536
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Entry
Vapar_1536 CDS
T00916
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03420
Nucleotide excision repair
vap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Vapar_1536
03430 Mismatch repair
Vapar_1536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_1536
Enzymes [BR:
vap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vapar_1536
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Vapar_1536
MMR (mismatch excision repair)
Other MMR factors
Vapar_1536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACS18187
UniProt:
C5CT62
LinkDB
All DBs
Position
1:1654775..1657204
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AA seq
809 aa
AA seq
DB search
MSLFGSYDATAGAPPSPAADSPLLANLNPEQRAAVTLPAGNALILAGAGSGKTRVLTTRI
AWLLQTGQVSPGGILAVTFTNKAAKEMMTRLTAMLPVNVRGMWIGTFHGLCNRFLRAHWK
LANLPSTFQILDTQDQLSAIKRLMKQFNVDDERFPAKQTQWFIAGAKEDGLRPKDVEIRT
EDDRKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDNDPVREHYQRRFRHILIDEFQD
TNRLQYAWIKMLSGSTAAGGQFVPGENNSVIAVGDDDQSIYAFRGARVGNMADFVREFDV
RHQIKLEQNYRSYSNILDSANELISHNKKRLGKNLRTDQGPGEPVRVYESPTDLAEAQWM
VEEMRQLVRDGFDRKEMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALA
YLRLLENKDDDTSFLRVVNFPPRGIGARTLEQLQDAARTAGRSLHDAVHAVGGKAGSNLT
AFVAKIDVLREQTQGASLREIIELVLDHSGLVEHYKADREGADRIENLEELVNAAESFVT
QEGFGRDAVALPIDELRQSPASQGLDPNRPVIDEPLAPDAETGETLSPLAAFLTHAALES
GDNQAQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVA
ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFEELPEGALKWLTPKNQGFTPSAFGYGGGY
ASTRGGGGSYSSGGGYGGSKDTFASPPVPPQKAAPSHGLRSGMQVFHNKFGEGTVLSLEG
SGDDARAQVKFARHGVKWLALSVAKLTPV
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttttcggctcgtacgacgccactgccggcgcacccccatccccagcggccgat
tcgcccctgctcgccaacctcaaccccgagcagcgtgccgcggtcaccctgcctgcgggc
aatgcgctgatccttgccggcgccggttcgggcaagacgcgggtgctgaccacccgcatc
gcctggctgctgcagaccggccaggtctcccccggcggcatcctggccgtgaccttcacc
aacaaggccgccaaggaaatgatgacgcggctcacggcaatgctgcccgtcaacgtgcgc
ggcatgtggatcggcaccttccacggcttgtgcaaccgctttttgcgcgcgcactggaag
ctggccaacctgccgtccaccttccagatcctcgacacgcaggaccagctctcggccatc
aagcggctcatgaagcagttcaacgtcgacgacgagcgctttccggccaagcagacccag
tggttcatcgccggcgccaaggaagacggcctgcgcccgaaggacgtggagatccgcacc
gaagacgaccgcaagaaggtcgagctctaccagctctacgaagagcagtgccagcgcgaa
ggcgtggtcgacttcggcgaactcatgctgcgcagctacgaactgctgcgcgacaacgac
ccggtgcgcgaacactaccagcggcgcttccgccacatcctgatcgacgagttccaggac
accaaccgcctgcagtacgcgtggatcaagatgctctcgggcagcaccgcggccggaggc
cagttcgtgccgggcgagaacaacagcgtgattgccgtgggcgacgacgaccagagcatc
tacgcctttcgcggcgcgcgcgtgggcaacatggccgacttcgtgcgtgagttcgatgtg
cgccaccagatcaagctggagcagaactaccgcagctacagcaacatcctcgactcggcc
aacgagctcatcagccacaacaagaagcgcctgggcaagaacctgcgtaccgaccagggc
cccggcgagccggtgcgcgtgtacgagtcgcccaccgacctggccgaggcgcagtggatg
gtcgaggaaatgcgccagctcgtgcgcgacggcttcgaccgcaaggaaatggccgtgctc
taccgcagcaatgcgcagagccgggtgatcgagacggcgctcttcaacgcctcggtgccg
taccgcgtgtatgggggcctgcgcttcttcgagcgcgccgaaatcaagcacgcgctggcc
tacctgcgcctgctcgagaacaaggacgacgacaccagcttcctgcgcgtggtcaacttt
ccgccgcgcggcatcggtgcgcgcacgctcgagcagctgcaggacgcggcgcgcacggcc
ggccgctcgctgcacgacgcggtgcatgccgtcggcggcaaggcgggctcgaacctcacg
gccttcgtcgccaagatcgacgtgctgcgcgagcagacgcagggcgcgagcctgcgcgag
atcatcgagctggtgctcgaccacagcggcctcgtcgaacactacaaggccgaccgcgaa
ggcgccgaccgcatcgagaacctggaagaactggtgaacgcggccgagagcttcgtcacg
caggaaggcttcggccgcgatgccgtggcgctgcccatcgacgaactgcgccagtcgccc
gcgagccagggcctggacccgaaccggcccgtcatcgacgagccgctcgcgcccgatgcc
gagaccggcgaaacgctgagcccgctggccgcgttcctcacgcatgcggcgctcgagtcg
ggcgacaaccaggcgcaggccgggcaggacgcggtgcagctcatgaccgtgcacgccgcc
aagggcctggagttcgactgcgtgttcatcaccggcatggaagagggcctgttcccgcac
gagaactccatgagcgacttcgagagcctcgaggaagagcgccgcctgatgtacgtggcg
atcacgcgcgcacgcaagcgcctgtacctgagccattcgcagacgcgcatgctgcacggc
cagacgcgctacaacgtgaagagccgcttcttcgaggaactgcccgaaggcgcgctcaag
tggctcacgccgaagaaccagggcttcacgccctcggccttcggctatggcggcggctat
gcgagcacgcgcggcggtggcggcagttacagcagcggtggcggctacggcggcagcaag
gacactttcgcgagcccgccggtgccgccgcagaaggccgcgccctcgcacggcctgcgc
tcgggcatgcaggtgttccacaacaagttcggcgaaggcacggtgctgtcgctcgaaggc
agcggcgacgatgcgcgcgcgcaggtcaagttcgctcgccatggcgtgaagtggcttgcg
ctgtcggtggccaagctcacgccggtgtga
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