Variovorax paradoxus S110: Vapar_1542
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Entry
Vapar_1542 CDS
T00916
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03030
DNA replication
vap03410
Base excision repair
vap03420
Nucleotide excision repair
vap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Vapar_1542
03410 Base excision repair
Vapar_1542
03420 Nucleotide excision repair
Vapar_1542
03440 Homologous recombination
Vapar_1542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vap03032
]
Vapar_1542
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_1542
Enzymes [BR:
vap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Vapar_1542
DNA replication proteins [BR:
vap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Vapar_1542
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Vapar_1542
NER (nucleotide excision repair)
GGR (global genome repair) factors
Vapar_1542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
PylC-like_N
Motif
Other DBs
NCBI-ProteinID:
ACS18193
UniProt:
C5CT68
LinkDB
All DBs
Position
1:1664985..1667807
Genome browser
AA seq
940 aa
AA seq
DB search
MTDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYA
ACIFDAPGKTFRDDLYPEYKANRSPMPDDLRSQIDPIHEVVKLMGWPVLCVPDIEADDVI
GTLAKTAAQQGIEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPTLMID
YQTLVGDAVDNVPGVEKVGPKTAAKWLLEYGSLDALIERAAEVKGQAGENLRKALDKLPL
SRQLVTIRTDCNLAAHVAGLPSLEGLPVGAPQTAELKPFYERFGFKSLVKSLEALEVPPE
LIEENIKKQMARGAAASADQGGLFDESAELGALEAASPASNLKYDTITTWEQFDAWLAKL
EAAELAAIDTETTSLDEMVARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLARLK
PWLENPAKKKLGQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLEAHRPHGLASLAERHLG
RSGISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHLALWPQIERDEKLRFIYQ
LEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGE
IFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKLGQLA
NPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPPGSVIASADYSQ
IELRIMAHISGDESLLRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGM
SSFGLARNLGIETKAAASYIDRYFARYPGVKAYMDETKALAKEKGYVETVFGRRLYLPEI
NSPNGPRRGGAERAAINAPMQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDELVFEV
PEAEIEWVRTEIPRLMAGVAELKVPLLAEIGIGPNWDKAH
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaagaaaacgctgctgctcgtcgatggctcgagctatctctaccgcgccttc
cacgccatgcccgacctgcgggccgtgcccggcgacccgaagagcccggcgaccggcgcc
atccggggaatgatcaacatgatgacggcgctgcgccgcgaggtgcgcgccgattacgcg
gcctgcatcttcgatgcgcccggcaagaccttccgcgacgacctgtatcccgaatacaag
gccaaccgctctcccatgcccgacgacctgcgcagccagatcgaccccatccacgaggtg
gtcaagctgatgggctggccggtgctgtgcgtgcccgacatcgaggccgacgacgtgatc
ggcacgctcgccaagaccgcggcgcagcagggcatcgaggtgatcgtttcgagcggcgac
aaggacctgagccagctggtggacgagcacatcacgatcatcgacacgatgaacggcaag
aagcgcgacgtggcgggcgttacagccgaattcggcgtgccgcctacgttgatgatcgac
taccagacgctggtgggcgatgccgtcgacaacgtgcccggcgtcgagaaggtcggcccc
aagacagccgccaagtggctgctcgaatacggctcgctcgacgcgctgatcgagcgcgcg
gccgaggtcaagggccaggccggcgagaacctgcgcaaggccctcgacaagctcccgctg
agccgccagctcgtcaccatccgcaccgattgcaacctggccgcgcacgtcgccggcctg
ccttcgctcgaaggcctgccggtgggcgcgccgcagaccgccgagctcaagcccttctac
gagaggttcggcttcaagagcctggtcaagtcgctcgaggcgctggaagtgccgcccgag
ctgatcgaggaaaacatcaagaagcagatggcccgtggcgccgctgcgagcgccgaccag
ggcggcctcttcgacgaatcggccgagctcggcgcgctggaggccgcatcgcccgcgagc
aacctgaagtacgacaccatcaccacctgggagcagttcgatgcctggctcgccaagctg
gaagccgccgagctggccgccatcgacaccgagaccacctcgctcgacgagatggtcgcg
cgcatcgtcggcgtgagcttcagcatcgagcccggcgcggcggcctacgttccactggcg
cacaactatcccgatgcacccgcgcaattgccgttcgacgaggtgctcgccaggctcaag
ccctggctcgaaaaccccgcgaagaaaaaactcggccagcacatcaagtacgaccgccat
gtgttcgccaaccacggcatcgaagtgcagggctatgcgcacgacaccatgctgcagagc
tacgtgctcgaggcgcaccggccgcacgggctcgcgagcctggccgaacgccacctgggc
cgcagcggcatctcgtacgaagacctgtgcggcaagggcgcgcaccagatcccgttcagc
caggtcgacatcgccaaggccgccgaatattcgtgcgaggacagcgaccagacgctcgac
gtccacctcgcgctgtggccgcagatcgagcgcgacgagaagctgcgcttcatctaccag
ctcgagatggattcgagcgaggcgctctaccgcgtcgagcgcaacggcgtgctgatcgac
gcgcccacgctggccgcgcagagccacgagctcggcacgcgcatcatggcgctcgagcag
gaggcctacgagatcgcgggccagcccttcaacctgggttcgcccaagcagatcggcgag
atcttcttcaccaagctgggcctgccggtggtcaagaagacgccgagcggcgcgccgagc
accgacgaggaagtgctcgagaaactggccgaggactatccgctgccggccaagatcctc
gagcaccgcggcctgtccaagctcaagggcacctacaccgacaagctcggccagctcgcc
aacccgcgcaccggccgcgtccacacgcactatgcgcaggccgtggcggtcacaggccgc
ctgtcgagcaacgatcccaacctgcagaacatcccgatccgcacgcccgaaggccgccgc
gtgcgcgaggccttcattgcaccgcccggcagcgtgatcgcaagcgccgactactcgcag
atcgagctgcgcatcatggcccacatcagcggcgacgagtcgctgctgcgcgccttcagg
gagggcatcgacgtgcaccgcgccaccgcggcggaggtgttcggcgccacgcccgaccag
gtgtcgagcgagcagcgccgctatgcgaaggtgatcaacttcgggctcatctacggcatg
agcagcttcggcctggcgcgcaacctgggcatcgagaccaaggccgcggcctcctacatc
gaccgctactttgcgcgctatccgggcgtgaaggcgtacatggacgagaccaaggcgctg
gccaaggaaaagggctatgtcgagaccgtgttcggccggcgcctgtacctgcccgagatc
aattcgcccaacggcccgcgccgcggcggcgccgagcgcgcggccatcaacgcgcccatg
cagggcacggcggccgacctcatcaagctcagcatgatcaaggtacagaacgtgcttgac
gaagagaagcgcgccacccgcatgatcatgcaggtgcacgacgaactggtgttcgaggtg
cccgaggcagagatcgaatgggtgcgcaccgaaatcccgcgcctgatggccggcgtggcc
gagctcaaggtgccgttgctggccgagatcggcatcggacccaactgggacaaggcgcac
tga
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