Variovorax paradoxus S110: Vapar_1626
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Entry
Vapar_1626 CDS
T00916
Name
(GenBank) pseudouridine synthase
KO
K06183
16S rRNA pseudouridine516 synthase [EC:
5.4.99.19
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vap03009
]
Vapar_1626
Enzymes [BR:
vap01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.19 16S rRNA pseudouridine516 synthase
Vapar_1626
Ribosome biogenesis [BR:
vap03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
Vapar_1626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
zf-C2H2_fungi_2
Motif
Other DBs
NCBI-ProteinID:
ACS18277
UniProt:
C5CTS7
LinkDB
All DBs
Position
1:1758933..1759682
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AA seq
249 aa
AA seq
DB search
MHLQDILYSQGFGTRRVCAGLVQQGHVSIAGAAVTDPFADLDPEDLLFTVQGTEWAYHEK
AYLMLHKPAGTECSQKPSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLT
DDGQFIHKMGSPKHHVPKVYEVTAKHPVDAAQIEKLLAGVVLDDDPKPVRAAACESDSPL
HLRLTLTEGKYHQVKRMLAAVGNRVEGLHRSRIGDLALPGDLAAGQWRWLTAEQVAALRA
PAKPPKTPK
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgcaagacatcctctattcccagggcttcggcacccgccgcgtgtgtgcgggc
ctggtccagcaaggccacgtgagcattgccggcgcggccgtgaccgacccctttgccgac
ctcgatcccgaagacctgctgttcaccgtgcagggcaccgaatgggcctaccacgagaag
gcctacctgatgctgcacaagcccgcgggcaccgagtgctcgcagaagccctcgacctac
ccgagcatctacacgctgctgccgtcgccgctgcggcttcggcccaacaagggcgcggtg
cagggcgtgcaggccatcggccggctcgaccaggacaccaccgggctgctgctgctgacg
gacgacggccagttcatccacaagatgggttcgcccaagcaccatgtgcccaaggtctac
gaagtcacggccaagcacccggtggacgcggcccagatcgagaagctgctggccggggtg
gtgctcgacgacgacccgaagccggtgcgcgcggcggcctgcgaatccgacagcccgctg
cacctgcggctgacgctgaccgagggcaagtaccaccaggtcaagcgcatgctggcggcg
gtcggcaaccgggtcgaggggctgcaccgctcccgcatcggcgacctggcgctgccgggc
gacctggcggccggccagtggcgctggctcacggccgagcaggtcgcggcgctgcgggca
cccgccaagccgccgaaaacgccgaaataa
DBGET
integrated database retrieval system
