Variovorax paradoxus S110: Vapar_1801
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Entry
Vapar_1801 CDS
T00916
Name
(GenBank) RNA methyltransferase, TrmA family
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vap03009
]
Vapar_1801
Enzymes [BR:
vap01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Vapar_1801
Ribosome biogenesis [BR:
vap03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Vapar_1801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_25
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_11
TPMT
TRAM
Motif
Other DBs
NCBI-ProteinID:
ACS18451
UniProt:
C5CUM3
LinkDB
All DBs
Position
1:1936853..1938301
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AA seq
482 aa
AA seq
DB search
MTESIEEKKVPAKTPATAAGEWLKVESLDLDAQGVAHNAEGMVVFIEGALPFEEVQFNVH
RRKNNWEQGTVTAIRRESSQRVRPGCPHFGLHTGACGGCKMQHLDEAAQVAVKQRALEDN
LWHLGKVRPDNVLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPV
LPKQVSDMLMPLRALIGSLDARETCPQIELACGDAPGTTSLGTIALVLRHLEPLSNADIG
RLKAFAAQNAGVQWWLQAKGPDTVKLLEEGGMPLSYELPQFGVTMPFKPTDFTQVNPHIN
RALVGKALRLLDVQADERVIDWFCGLGNFTLPLASRAREVLGIEGSDTLVARASDNFSKN
QPATSARRALSATRFVARNLFEMTPAMLVADGSADKWLVDPPREGAFALAKAMADLHLQP
ELRTDGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRCTFAGVINMFPHTAHVESIAVFD
LA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatccatcgaagaaaagaaagtccccgcgaaaaccccggccaccgcggcgggc
gaatggctcaaggtcgagtcgctcgacctcgacgcgcaaggcgtggcgcacaacgccgaa
ggcatggtcgtgttcatcgaaggggccctgcctttcgaggaagtgcagttcaacgttcat
cgccgcaagaacaactgggagcagggcacggtcacggccatccggcgcgaatcgtcgcag
cgggtgcggcccggctgcccgcatttcggcttgcacaccggtgcctgcggcggctgcaag
atgcagcacctggacgaggcggcgcaggtcgcggtgaagcagcgcgccctcgaggacaac
ctgtggcacctcggcaaggtgcggcccgacaacgtgctgcggccgctggaagggccggcc
tggcactaccgctaccgcgcccggctctcggtgcgccatgtggtcaagaagggcacggtg
ctgatcggcttccacgagcgcaagagccggtacctcgccgacatgcaggtatgcccggtg
ctgcccaagcaggtcagcgacatgctgatgccgttgcgcgcattgatcggctcgctggac
gcccgcgagacctgcccgcagatcgagctcgcctgcggcgatgcgcccggcaccacctcg
ctcggcacgatcgccttggtgctgaggcacctggagccgctctccaatgcggacatcggc
cgcctgaaggcttttgcggcgcagaacgccggcgtccagtggtggctgcaggccaagggg
ccggacaccgtgaagctgctcgaagaaggcggcatgccgctgtcctacgagctgccccag
ttcggtgtgacgatgccgttcaagcccaccgatttcacgcaggtcaatccgcacatcaac
cgcgccctcgtaggaaaggcgctgcgcctgctcgacgtgcaggccgacgagcgcgtgatc
gactggttctgcggcctgggcaacttcaccctgccgctggccagccgtgcgcgcgaggtc
ctgggcatcgagggcagcgacaccctggtcgcgcgcgcaagcgacaacttcagcaagaac
cagcccgccacctccgccaggcgggcgctgtcggcgacgcggttcgtggcccgcaacctc
ttcgaaatgacccccgccatgctggtggccgatggcagcgccgacaagtggctggtcgac
ccgccgcgcgaaggcgccttcgcgctggccaaggccatggccgacctgcacctgcagccc
gagcttcgaaccgatggctggacaccgcccaagcgcatcgtctacgtgagctgcaacccg
tccaccctggcgcgggacgccggcctgctggtgcaccaggccggctatcgctgcacgttc
gcgggggtgatcaacatgttcccgcacacggcgcacgtcgagtcgattgcggtgttcgac
ctggcatga
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