Variovorax paradoxus S110: Vapar_1894
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Entry
Vapar_1894 CDS
T00916
Name
(GenBank) cysteine desulfurase, SufS subfamily
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00450
Selenocompound metabolism
vap01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
Vapar_1894
Enzymes [BR:
vap01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
Vapar_1894
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
Vapar_1894
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
DegT_DnrJ_EryC1
SelA
Motif
Other DBs
NCBI-ProteinID:
ACS18543
UniProt:
C5CV94
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All DBs
Position
1:2024950..2026842
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AA seq
630 aa
AA seq
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MASAMFSAPPGAQFPANIAPPGSPLASPAGFGPSVPGTPIPQGQIPGANLLPASPTQLPS
LANRAPALAPHAVAGNGVPDTVLSVAPAFEPRSGGAVQGVPQQVGAPVAPQAGASPFYFL
SDGYGHPSAGTTPAISPPGQVLPPLPLAGEGGSVQPLAGVPSPQPLTPALSPEGRGSQSR
MQGSEKPQFYFVDAVRLPNGFVTPAKPDPRGPDAVPLAGSGRHPPFDVHAVRRDFPILQE
RVNGRQLVWFDNAATTHKPQSVIDRIAYFYEHENSNIHRAAHELAARATDAYEGARERVR
KFINAPEVEEVIFVRGTTEAINLVAKSWGGQHVGEGDEIMVSNLEHHANIVPWQQLAAAK
GAKLRVIPVDDSGQVLLDEYRKLLNDRTKIVAVTQVSNALGTVVPVKEIVELAHRAGAKA
LVDGAQSVSHMRVDVQDIGADFFVFSGHKVFGPTGIGVVWGKREVLEDMPPWQGGGNMIA
DVTFEKTVFQPIPNKFEAGTGNIADAVGLGAAIDYVNKVGIENIARYEHDLLVYGMAQLG
AIPGVRLIGTAADKASVMSFVLDSYTTEEVGHALNDEGIAVRTGHHCAQPILRRFGVETT
VRPSLAFYNTFDEIDRLVSVVRRLAGQRRG
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgccatgttctccgcaccgccgggcgcgcagtttcctgccaacatcgcgccc
ccggggtcgccgctggcgagccccgcgggcttcgggcccagcgtgcccggcacgccgatt
ccgcaggggcagattccgggcgccaacctgctgccggcatcgcccacgcagctgccttcg
ctcgcgaatcgcgcgccggcgctggcgccgcacgcggtggcgggcaatggcgtgcccgac
acggtgctgtcggtggcgccggctttcgagccgcgttcgggcggtgcggtgcagggcgtg
ccgcagcaagtcggcgcacccgtggcgccgcaggccggggcctcgccgttctacttcttg
agcgacggttacggccatccatccgctggcacgacccccgccatctcgccccccgggcag
gtgttgccccctctcccgcttgcgggggagggcgggagcgttcaaccacttgctggcgtt
ccgtcgccgcagcccctcaccccagccctctccccggaggggcgagggagccaatcccgg
atgcaagggagtgagaagccgcagttctacttcgtcgacgcggtgcgcctgcccaatggc
ttcgtcacgccggccaagcccgatccgcgcgggcccgatgcggtgccgctcgcgggcagc
ggccggcatccgccgttcgacgtccacgccgtgcgccgcgacttcccgatcctgcaggag
cgcgtgaacggccggcagctcgtgtggttcgacaacgccgccaccacgcacaagccgcaa
tcggtcatcgaccgcatcgcgtacttctacgaacacgagaactccaacatccaccgcgcg
gcgcatgaactggccgcacgcgccaccgatgcctacgaaggcgcgcgtgagcgcgtgcga
aagttcatcaacgcacccgaggtcgaagaagtgatcttcgtgcgcggcaccaccgaggcc
atcaacctcgtggccaagagctggggcgggcagcatgtgggcgagggcgacgagatcatg
gtctccaacctcgagcaccacgccaacatcgtgccgtggcagcagctcgccgccgccaag
ggcgcgaagctgcgcgtcatcccggtggacgattcgggccaggtgctgctcgacgaatac
cgcaagctgctgaacgaccgcacgaagatcgtcgccgtcacgcaggtctcgaacgcgctg
ggcaccgtggtgccggtgaaggagatcgtcgagctggcgcaccgcgcgggcgccaaggcg
ctggtcgacggcgcgcaatcggtctcgcacatgcgggtcgatgtgcaggacatcggcgcc
gacttcttcgtgttctccggccacaaggtgttcggcccgaccggcatcggcgtggtctgg
ggcaagcgcgaagtgctggaggacatgccgccctggcagggcggcggcaacatgattgcc
gacgtaactttcgagaagaccgtgttccagccgatcccgaacaagttcgaggccggcacc
ggcaacatcgccgatgccgtggggctgggcgcggccatcgactacgtgaacaaggtcggc
atcgagaacatcgcgcgctacgagcacgacctgctcgtgtacggcatggcgcagctcggc
gcgattccgggtgtgcggctgatcggcacggcggccgacaaggccagcgtgatgtccttc
gtgctcgacagctacaccaccgaagaggtgggccacgcgctcaacgacgaaggcattgcc
gtgcgcacgggccaccattgcgcgcagccgatcctacgccgcttcggtgtcgagaccacc
gtgcggccgtcgctggcgttctacaacaccttcgacgagatcgaccggctggtgtcggtg
gtgcggcgattggcagggcagcggcgcggctga
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