Variovorax paradoxus S110: Vapar_2113
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Entry
Vapar_2113 CDS
T00916
Name
(GenBank) Integrase catalytic region
Organism
vap
Variovorax paradoxus S110
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mu-transpos_C_2
HTH_23
Sigma70_r4_2
HTH_3
HTH_29
TnsD
HTH_38
HTH_26
HTH_Crp_2
HTH_17
HTH_24
GntR
Terminase_5
HTH_AsnC-type
YfeC-like
HTH_28
CENP-B_N
HTH_IclR
HTH_31
Motif
Other DBs
NCBI-ProteinID:
ACS18748
UniProt:
C5CWJ3
LinkDB
All DBs
Position
1:2254579..2256090
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AA seq
503 aa
AA seq
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MDMIGRIRRLHARDKLSEREIARMTGLSRNTVSKWLRAPAAEAPKYRREARPNKLSAFET
ALKQALTADARRPKHERRTARALHAEIKAAGYDGGYSAITDFVRAWRQGEGQAVNVTAFV
PLTFELGEAFQFDWSEEGLVVGGIYYRMQVSHLKLCASRAFWLVAYPSQGHEMLFDAHTR
SFAALGGVARRGIYDNMRTAVDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGR
VEKNVQDSRRRIWIEAGRRRFGSFVELNAWLAERCRALWNEVRHPEHSQFSVAEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYPGGIVVVADDA
VVARHERLSASGGTRYDWQHYIPLIQRKPGALRNGAPFADMPEALQQLRRGLLRQAGGDR
VMAQVLAIVPTAGLDAVIVAVELALQSGPPSGRVSVEHVVNVLGRLTAPAAPQSAQTALQ
IVTPPLANTARYDGLRGQEVDHA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggacatgattggcaggatccgacggctgcacgcgagggacaagctgtcggagcgcgag
atagcgcgcatgacagggctgtcgcgcaacacggtgtcaaagtggctgcgcgcaccggca
gccgaggcgccgaagtaccggcgcgaagcaaggccgaacaagctgagtgcattcgagaca
gcgctgaagcaggcattgacggccgatgcgcgacggcccaagcacgagcggcgcacggca
cgcgcgctgcacgctgagatcaaggcggcgggctacgacggcgggtactcggccatcact
gacttcgttcgagcgtggcgccaaggcgagggacaggcagtcaacgtcaccgcgttcgtt
ccactgaccttcgagctcggcgaggccttccagttcgattggagcgaagaaggcctggtc
gtcggcggcatctattaccgcatgcaggtgtcgcacctgaagctgtgcgcgagccgtgcg
ttctggctggtggcgtacccgagccaaggtcacgagatgctgttcgacgcccacacgagg
tcgtttgcagcgctgggtggtgtggcgcgccgcgggatctacgacaacatgcgcaccgcc
gtcgataaggttcacaagggtaagggtcgcaccgtcaatgcccgcttcgccgtgatgtgc
gcgcactacctgtacgaccccgacttctgcaacgtcgcctcgggctgggagaaggggcgc
gtggagaagaacgtacaggacagccgtcggcgcatctggatcgaggcgggccggcgccgc
ttcggctccttcgtcgaactcaatgcctggttggcggagcgatgccgagcgctgtggaac
gaggtgcgccaccccgagcacagccagttcagcgtggccgagatgctcgagcacgagcgt
ccccacctgatgcccatgcctgagcccttcgatggctacgtagagaagcctgcccgggtg
tcgagcacgtgcctggtgtcggtggcacgtaaccgctactcggtgccctgcgagctggcc
gggcagatggtcagcacgcggctgtatccgggcggcatcgtggttgttgccgatgatgcg
gtggttgcgcgacacgagcgcctgagcgcctctggcggcacccgctacgactggcagcac
tacattccgctcatccagcgcaagcctggtgcattgaggaacggtgcgcccttcgcagac
atgcccgaggcactgcagcaactgcgccgcggcctgctgcgccaggccggtggagatcgc
gtgatggcgcaggtgttggccatcgtgccgacggcggggctggacgcggtgatcgtggcg
gtcgagttggcgctgcagagtggtccgccatcgggtcgggtcagcgtggagcacgtcgtc
aacgtcctcgggcggctcaccgcaccggcagcaccgcagagtgcgcagacggcgctgcag
atcgtcacgccgccgctggccaacacggcccgatacgacggcttgcgtggacaggaggtg
gaccatgcgtga
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