KEGG   Variovorax paradoxus S110: Vapar_2322
Entry
Vapar_2322        CDS       T00916                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vap  Variovorax paradoxus S110
Pathway
vap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Vapar_2322
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vap03021]
    Vapar_2322
   03019 Messenger RNA biogenesis [BR:vap03019]
    Vapar_2322
Transcription machinery [BR:vap03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Vapar_2322
Messenger RNA biogenesis [BR:vap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Vapar_2322
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA AAA_25 Spore_III_AA S1CSD-TOTE-2 Fungal_virus_P2_C ResIII AAA_19
Other DBs
NCBI-ProteinID: ACS18949
UniProt: C5CYJ0
LinkDB
Position
1:complement(2482188..2483453)
AA seq 421 aa
MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
DGPPEQNKHKVMFENLTPLFPKEQMKLERDGIKSDENITGRIIDIIAPIGKGQRALLVAP
PKSGKTVMMQHIAHAISANYPEVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARH
VHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKR
FLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQ
LNRSGTRREELLLAPEILQKTRILRQLMYNMDEIESMELMLKNMKATKTNVEFFDMMRRG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcacttaaacgaactcaaggcactccacgtgtctgaagtcctcaagcaggctgaagcg
cttgagatcgaaaacgtcggccgcatgcgcaagcaggagctgatgttcgcgatcatcaag
aagcgcgccaaggccggcgaacaggtctttgccgacggcgtgctcgaaatcctgcccgac
ggcttcggcttcctgcgcagccccgacaccagcttcacggccagcaccgacgacatctac
atctcgccgagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgaaggcgaa
gtgcgcacgcccaaggacggcgagcgctactttgcgctgaccaagctcgacaaggtcaac
gacggtccgcccgagcagaacaagcacaaggtgatgttcgagaacctgacgccgctgttc
cccaaggagcagatgaagctggagcgcgacggcatcaagagcgacgagaacatcacgggc
cggatcatcgacatcatcgcccccatcggcaagggccagcgcgccctgctggtggcgccg
cccaagagcggcaagacggtgatgatgcagcacatcgcccacgcgatcagcgccaactac
cccgaagtgcacatgatggtgctgctggtggacgagcggcccgaagaagtgaccgaaatg
cagcgcaccgtgaagggcgaggtcattgcctcgaccttcgacgagcccgccgcgcgccac
gtgcacgtggccgaaatggtgatcgagcgcgccaagcgcctggtcgagctcaagaaggac
gtggtgatcctgctcgactcgatcacccgcctcgcccgcgcctacaacaacgtcgtgccc
tcgtcgggcaaggtgctcacgggcggtgtcgactccaacgcgctgcagcgccccaagcgc
ttcctgggcgccgcgcgcaacgtcgaggaaggcggctcgctgaccatcatcggcaccgcg
ctgatcgacaccggcagccgcatggacgaagtgatcttcgaagagttcaagggcaccggc
aactccgaaatccacctggaccgccgcctgtacgaaaagcgcgtgttcccctcgatccag
ctcaaccgcagcggcacgcgccgcgaagagctgctgctggcgcccgagatcctgcagaag
acccgcatcctgcgccagctcatgtacaacatggacgagatcgagtcgatggagctcatg
ctcaagaacatgaaggcgacgaaaacgaatgtcgaattcttcgacatgatgcgtcgcgga
ggctga

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