Variovorax paradoxus S110: Vapar_2562
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Entry
Vapar_2562 CDS
T00916
Name
(GenBank) efflux transporter, RND family, MFP subunit
KO
K18901
membrane fusion protein, multidrug efflux system
Organism
vap
Variovorax paradoxus S110
Module
vap_M00698
Multidrug resistance, efflux pump BpeEF-OprC
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vap02000
]
Vapar_2562
01504 Antimicrobial resistance genes [BR:
vap01504
]
Vapar_2562
Transporters [BR:
vap02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
Vapar_2562
Antimicrobial resistance genes [BR:
vap01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump BpeEF-OprC [MD:
M00698
]
Vapar_2562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
Biotin_lipoyl_2
HlyD_3
Biotin_lipoyl
CusB_dom_1
Motif
Other DBs
NCBI-ProteinID:
ACS19188
UniProt:
C5CKN4
LinkDB
All DBs
Position
1:2702261..2703511
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AA seq
416 aa
AA seq
DB search
MSNNKQNLSSAARKGLWPAVTGLTALLAVAAAVLGMHSFKAEATAPAAAQQGTPVSVATV
ASSEINAWDEFSGRLEAVQRVDVRSRVAGAVQSVHFREGALVKQGDLLITIDPAPYAAEV
ERAEAQVASAQARQAFSRSEQERAKRLWDQQAIAQREYDERVNAAREAEANLRAAQASLQ
SARLNLGYTQVRAPVAGRIGKLEVTMGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVIT
RALKDLPSGASARGQIESIPVQMGTAGLEGTPFTGKLQLIDNQVDARSGTVRVRASFDNK
DGALIPGQFARIRMGQARSDSALLVSERAIGTDQNKKFVMVVGEDNKATYREVTLGASIN
GLRVVSKGLKAGDRVVVNGLQHIRPGALVVPQTVTMDAKADTKQQQPERVAEAAKS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacaacaagcaaaacctttcttccgccgcccgcaagggcctgtggcccgcagtg
accggcctcaccgcactgctggcggtggccgccgcggtgctcggcatgcacagcttcaag
gcggaggccacggcaccggccgcggcgcagcagggcacgccggtctcggtggccaccgtg
gcttcgagcgagatcaatgcctgggacgagttctcgggccggctcgaggcggtgcagcgc
gtcgacgtgcgctcccgcgtggcgggagccgtgcagtcggtgcacttccgcgaaggcgcg
ctggtgaagcagggcgacctgctgatcaccatcgaccccgcgccgtacgcggccgaggtg
gagcgcgccgaagcgcaggtggcctcggcccaggcccgccaggccttcagccgcagcgag
caggagcgcgccaagcgcctgtgggaccagcaggccatcgcccagcgcgaatacgacgag
cgcgtgaacgccgcccgtgaagccgaagccaacctgcgcgccgcgcaagcgtcgctgcag
tcggcgcggctgaacctgggctacacccaggtgcgggcgccggtggcgggccgcatcggc
aagctcgaagtgacgatgggcaacctggtggccgccggccccggcgcgccggtgctgacc
acgctggtgtcggtgagcccgatctacgcgagcttcgatgccgacgagcaggtgatcacg
cgggccctgaaggacctgccgagcggcgccagcgcccgcggccagatcgagagcattccc
gtgcagatgggcaccgccggcctcgaaggcacgcccttcaccggcaagctgcagctgatc
gacaaccaggtcgatgcgcgcagcggcacagtgcgtgtgcgggcctcgttcgacaacaag
gacggcgccctcattccgggccagttcgcccgcatccgcatgggccaggcgcgcagcgac
tcggccctgctggtgagcgagcgcgccatcggcaccgaccagaacaagaagttcgtgatg
gtggtgggcgaggacaacaaggccacgtaccgcgaagtcacgctcggcgcatcgatcaac
gggctgcgcgtggtgagcaagggcctgaaggccggcgaccgcgtggtggtcaacggcctg
cagcacatccgccccggtgcgctggtggtgccgcagaccgtgacgatggacgccaaggcc
gacaccaagcaacaacaaccggaacgcgtcgcggaagccgcgaagtcctga
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