Variovorax paradoxus S110: Vapar_2644
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Entry
Vapar_2644 CDS
T00916
Name
(GenBank) exodeoxyribonuclease VII, large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Vapar_2644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_2644
Enzymes [BR:
vap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
Vapar_2644
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Vapar_2644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Apolipoprotein
Motif
Other DBs
NCBI-ProteinID:
ACS19269
UniProt:
C5CKW5
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All DBs
Position
1:2787226..2788536
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AA seq
436 aa
AA seq
DB search
MNLRDSNPTPGPRIWAVGALCRAVADALDARFNPVAVRGEISGFSRASSGHCYFALKDSS
GQLRCAMFRRAAGLLDFSPRDGDQVEVRGRLAVYEPRGDLQLVVESLQRAGQGALFEQFL
QRKARLEAEGLFDPERKRALPVMPRAVGLVTSLGAAALHDVVTALRRRVPHIPVVLAPAA
VQGANAPAELVRALQSLYALEPAVDVILLVRGGGSIEDLWAFNDEALARTIVQSPVPLIC
GVGHETDFTIADFCADLRAPTPTAAAELVSAPQAMWLGAIDLLDERLDSALGARLDVLGQ
RLDQAAARLGRPSGLVARQQLRLAHHSQRLRYALLSRAERLAQVPRAIAADFPLRLERAM
AQRRERLERVALRLRLLDPALVLQRGYAWLTDPDGRAIVSAKKLSPGDAVVARLADGSVD
LAVVPGKTGTRPTPGA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
gtgaacctgcgtgactcgaatccaacgccgggcccgcggatctgggctgtgggcgcgctg
tgccgggcggtggccgacgcgctcgatgcgcgcttcaacccggtcgcggtgcgcggcgag
atttccggcttctcgcgcgcgtcgagcggacattgttacttcgcgctcaaggattcgtcc
ggccagctgcgctgcgcgatgttccggcgcgccgcgggcctgctcgatttttcgccgcgc
gacggcgaccaggtcgaagtgcgcgggcggctcgcggtgtacgaaccgcgcggcgacctg
caactggtggtcgaaagcctgcagcgcgccggccagggcgcgctgttcgagcaattcctg
cagcgcaaggcgcggctcgaggccgaagggctcttcgatccggagcgcaagcgggcgctg
ccggtcatgccgcgcgcggtcggcctcgtcacctcgctcggcgccgcggcgctgcacgac
gtggtcacggcgctgcggcgccgcgtgccgcacattcccgtggtgctggcgccggcggcg
gtgcagggcgccaacgcgccggcggaactcgtgcgcgcgctgcaatcgctgtacgcactg
gaaccggccgtcgacgtgatcctgctggtgcgcggcggcggctccatcgaggatctctgg
gcgttcaatgatgaagccctggcgcgcaccatcgtccaaagcccggttccgctgatctgc
ggcgtcggccacgaaaccgacttcaccatcgccgacttctgcgccgacctgcgcgcgccc
acgcccacggccgcggcggagctcgtcagcgcgccccaggcgatgtggctcggtgcgatc
gatctgctggatgaacggctcgacagcgcactgggtgcgcgcctcgatgtactggggcag
cgcctcgaccaggcggcagcgcgcctgggccggccctccgggctggtggcgcgccagcag
ctgcggctcgcgcatcattcgcagcggctgcgctatgcgctgctgtccagggccgagcgc
ctggcccaggtgccgcgcgcgattgctgccgattttccgctcaggctcgagcgcgcgatg
gcgcagcggcgcgagcggctggaacgcgtcgccctgcgcctgcggctgctcgatcctgcg
ctggtgctccagcgcggctatgcctggctcaccgatcccgacggccgcgcgatcgtcagc
gccaagaagctgagcccgggcgatgccgtggtcgcgcggctcgccgatggttcggtcgac
ctggccgtcgtgcccggcaaaacgggaacgcgtccgacgccgggcgcgtaa
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