Variovorax paradoxus S110: Vapar_2983
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Entry
Vapar_2983 CDS
T00916
Name
(GenBank) tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
KO
K15461
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:
2.1.1.61
1.5.-.-]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vap03016
]
Vapar_2983
Enzymes [BR:
vap01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.61 tRNA 5-(aminomethyl)-2-thiouridylate-methyltransferase
Vapar_2983
Transfer RNA biogenesis [BR:
vap03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
Vapar_2983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAO
Methyltransf_30
NAD_binding_8
Pyr_redox_2
Pyr_redox
3HCDH_N
HI0933_like
FAD_binding_3
MurD-like_N
AlaDh_PNT_C
NAD_binding_9
Lycopene_cycl
UDPG_MGDP_dh_N
GIDA
FAD_binding_2
ApbA
DUF348
NAD_binding_2
CDC24_OB2
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ACS19603
UniProt:
C5CNX6
LinkDB
All DBs
Position
1:3139010..3140872
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AA seq
620 aa
AA seq
DB search
MAAEPVAWRADGVPLSERFGDIYHTETGALAQSRHVFLGGCGLPGAWSGRPQWRILETGF
GLGLNFLTSWQAWRADANRPRMLHYVSVEAYPVGPHDLLRAAGAYPELMPLAEQLAAQWH
GLLPGFHRLAFDAGRVLLTLCIGDVQPMLRAQRFEADSLFLDGFSPQQNPAMWSPDTLKA
VSRFARQGTGLATWTYARAVRDALSQNGFQLERRPGLPPKRDCLGGVFAPAWTVRRRGPA
PEQVEAPGRCAVIGAGLAGAAVAASLARRGWQVTVLDAADRPAAGASGLPVGVMAPHVSP
DDALLSRLTRAGIRATWHELERLLEEGRDWRASGVLERRPEGDTRVPTGWSDSGPNESWP
ASAVQLAQARLPADAPALWHARAGWVRPQRLITAWLRGPGIEFRGNARVARMAHGGGTWQ
LFDAADQLLAEAERVVIAAGFESGRFAPELPLQPVRGQVMWGGMAADDGLPPTPVNGDGH
LIAHVPADGDGTQLWLAGATFDRDSTNLEANGADATANRERLERLHPAAAAALAASFDRG
QVNAWVGVRCASGDRRPLVGPLDADGAAGAPSPWACTALGSRGLSFAALCAELLAAQWHG
EPLPLPANLAKALATQRTQA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
ttggccgccgagcccgtcgcctggcgcgccgacggcgtgccgttgagcgagcgcttcggc
gacatctatcacaccgaaaccggggcgctggcgcagtcgcgccacgtgttcctgggcggc
tgcggcctgcccggcgcctggtccgggcggccgcaatggcggattctcgaaaccggattc
gggcttggcctcaatttcctgacaagctggcaggcctggcgcgccgatgcgaaccggccg
cggatgctgcactacgtctcggtcgaggcgtacccggtcgggccccatgacctgctgcgc
gccgccggggcctaccccgagctgatgccgctggccgagcaactggccgcgcagtggcac
gggctgctgccgggctttcaccggctggccttcgacgccggccgcgtgctgctcacgctg
tgcatcggcgacgtgcagccgatgctgcgcgcccagcgcttcgaggccgacagcctcttc
ctggacggcttcagcccgcagcagaaccccgccatgtggtcgcccgacacgctgaaggcg
gtgtcgcgctttgcgcgccagggcacgggccttgccacctggacctatgcgcgtgcggtg
cgcgatgcgctctcgcagaacggcttccagctcgaaaggcggccgggcctgccgcccaag
cgcgactgcctgggcggcgtgttcgcgccggcctggacggtgcgccgtcgcggccccgcg
cccgagcaggtcgaagcaccgggccgctgcgccgtgatcggtgccgggctggccggcgcg
gccgtggctgccagcctggcgcggcgcggatggcaggtcacggtgctcgatgcggcggac
cgccccgccgccggtgcgtccggactcccggtcggtgtgatggcgccgcatgtctcgccc
gacgatgccctgctgtcgcggctcacgcgcgccggcatccgcgcgacctggcatgaactg
gaacgcctgctggaggaaggccgcgattggcgcgccagtggcgtgctggagcgccggccc
gagggcgacacgcgcgttcccaccgggtggagcgacagcggccccaatgagtcgtggccc
gcgagcgctgtgcaattggcacaggcccgcttgccggccgatgcgccggccctctggcat
gcgcgcgcgggctgggtgcggccgcagcggctgatcacggcctggctgcgcgggccgggc
atcgagttccgcggcaacgcacgggtggcacgcatggcgcacggcggtggcacgtggcag
ctgttcgatgcggcggaccaactgctggccgaagcggagcgcgtggtgatcgccgcgggc
ttcgaatcgggccgcttcgcaccggagcttccgctgcagcccgtgcgcggccaggtcatg
tggggcggcatggcggcggatgacgggctgcccccgacacccgtcaatggcgacggccac
ctgatcgcgcacgtacccgccgacggcgacggcacccagctctggctggccggcgccacc
ttcgaccgcgacagcaccaatctcgaggcgaacggcgccgatgccaccgccaaccgcgag
cgcctggagcgcctgcatcccgccgcggccgccgcgctggccgcgagcttcgaccgcggc
caggtcaacgcctgggtcggcgtgcgctgcgcatcgggcgaccgccggccgctggtcggc
ccgctcgatgccgatggtgcagccggtgcgccaagtccctgggcctgcaccgcactgggc
tcgcgcggcctgagctttgcggccctgtgcgccgaactgctggccgcgcaatggcatggc
gaaccgctgccgctgcccgccaacctggccaaggcgctcgccacccagcgaacgcaagcg
tag
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