Variovorax paradoxus S110: Vapar_3089
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Entry
Vapar_3089 CDS
T00916
Name
(GenBank) HhH-GPD family protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Vapar_3089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_3089
Enzymes [BR:
vap01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Vapar_3089
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Vapar_3089
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
DUF4909
HHH
Motif
Other DBs
NCBI-ProteinID:
ACS19708
LinkDB
All DBs
Position
1:complement(3245977..3246630)
Genome browser
AA seq
217 aa
AA seq
DB search
MPASSKNPAVQIFTPDYWEEACKHLSRKDRVMKRLIPKFGDACLESRGDAFTTLARSIVG
QQISVKAAQTVWDKFVVLPRKLTPANVLKLKVDDMRAAGLSARKIEYLVDLAIHFDSGAV
HVDAWKDMADELIIDELVAIRGIGRWTAEMFLIFHLMRPNVLPVDDLGLLNGISVNYFSG
DPVSRSDARDVAVAWAPYCSVATWYIWRSLDPVPVAY
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcttcctcgaaaaacccggcggtccagatcttcacgccggactattgggaagag
gcctgcaagcacctgtccaggaaggaccgcgtgatgaagcggctgatcccgaagttcggc
gatgcctgcctcgagtcgcgcggcgacgcattcaccacgctcgcacgcagcatcgtgggc
cagcagatttcggtgaaggccgcgcagaccgtgtgggacaagttcgtggtgctgccgcgc
aagctcacgccggccaacgtgctcaagctcaaggtcgacgacatgcgcgcggcggggctg
tcggcgcgcaagatcgagtacctggtggacctggccattcacttcgattcgggcgcggtg
cacgtcgatgcctggaaggacatggccgacgaactcatcatcgacgagctcgtggccatc
cgcggcatcggccgctggacggccgagatgttcctcatcttccacctgatgcgccccaac
gtgctgccggtcgacgacctgggcctgctcaacggcatcagcgtcaactatttttcgggc
gatcccgtgagccgcagcgatgcccgcgacgttgccgtggcctgggccccgtattgcagc
gtggcgacttggtatatttggcgatcgctcgacccggtaccggtcgcatactga
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