Variovorax paradoxus S110: Vapar_3103
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Entry
Vapar_3103 CDS
T00916
Name
(GenBank) type 4 fimbrial biogenesis protein PilY1
KO
K02674
type IV pilus assembly protein PilY1
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
vap02044
]
Vapar_3103
02035 Bacterial motility proteins [BR:
vap02035
]
Vapar_3103
Secretion system [BR:
vap02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
Vapar_3103
Bacterial motility proteins [BR:
vap02035
]
Pilus system
Pilus assembly proteins
Vapar_3103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neisseria_PilC
PQQ
FG-GAP_3
VWA_2
PQQ_3
Motif
Other DBs
NCBI-ProteinID:
ACS19722
UniProt:
C5CPY3
LinkDB
All DBs
Position
1:complement(3262434..3265781)
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AA seq
1115 aa
AA seq
DB search
MLCGLVLAQTAGHAAQYPLSQAPRNTAVKEPAPNVIVSVDNSGSMAASSRASDGNWAPPA
GTPTRLEALKTALRDNFSAANIPNGRIRLSWQAMNNNKDGSCVGFFGDIAPGIYQAGSCL
VNGRANANLMRSLDDTHRANFMSWVDALAAEGGTPLHAMMTRAGEYMTTTGRYSPYSNDP
GVEGAAQSSCRKAFHIFMTDGDYNFFGFNPDPAALNMPAIGNADGTSRALPDAVTYVPRA
PYKDNAGAVSNSANWRKYGSGWRPTAEYRPTLADMAFHYWATDLQPDVPNKLKKIVAEPG
NATVGKATVPEYWNPKNDPATWQHLITYTIGFGAASSWAGTPAISANASQPTYSGDYAGL
VDGTAAWRNPLASTLETTEFTWNDGSVTTGTPRWSSGGGAYGYYHERADNAAAVRMDLWH
AALNSRGTFTPAANAKALSDAFRSILSQILLNTSASLTSISASGSRVSTATSAYQAGYDT
ADWSGKLTATPFGSNGKLAAAPAWSARELLDARMAVPGAHDGNRKVLSFSGTSAAASGAG
VPFRWANLSEAQKAALKGSTATDAASTALGQGVLDFLRGDRSNEGAGLNLRKRGHVLGDI
VGSSVRYVGKPNSGFTHEGYAAFASTIARAPMVYVGANDGMLHAFNAGTGQEAFAYVPEG
VYGTAAAPQLKKLSESTYSHRYYVDGSPFVADIYMGSAADAKATDTEKAKLWKSFLVGTL
GAGGKGYFVLDVTKPENIGEANAAGVALIDTTALADDDLGHQFQQPVLDSFSRRALQVAR
LNNGRRAVILGNGYNSTSEKAMLWIQYLDGDKSVLKIPAPATQAAGTGNGLSAPQVVDSN
GDGKVDYVYAGDLLGNLWKFDLSSAKSSDWKATLGASSLDDAPLFAAGATQPITAAPLVV
DHPRGGYMVMFGTGRLFAAGDEGSTAQQYLYGVWDRANGSTGTAALADLVAQTIGTGTVK
EGDVEFRTASNHGVSYSGSGGKRGWYLQLGTAGERIVYPGDALSGSAGLFSSTIPGSASN
SLDCAPGTSDDGWSMVVDFFSGVVPDGIAYNGSTSALGSYLGFRNHSGRDDIVFRPQDAA
EKGKHVICNAAGGCNETELPQAVRRFGWRNLISSN
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgcggcctcgtgctggcgcagaccgccgggcacgccgcgcaatatccgctgtcc
caggcgccgcgcaacacggcggtcaaggagccggcgccgaatgtgatcgtgtcggtcgac
aactcgggcagcatggcggcgtcgtcgcgagcgtcggacggaaattgggcaccgccggcc
ggaacacccacgcggctcgaagcgctgaagaccgcgctcagggacaacttctcggcggcc
aacattcccaacggccggatccgcctttcctggcaggcgatgaacaacaacaaggacggc
agctgcgtcggcttcttcggcgacatcgcccctggcatctatcaggccggcagttgtctc
gtcaatggccgagccaatgcgaacctgatgcgttcgctggacgacacgcaccgcgccaat
ttcatgagctgggtcgacgccctggccgcggaaggtggaacacccttgcacgccatgatg
acccgcgctggcgaatacatgacgaccaccggccggtacagcccgtactcgaacgaccct
ggcgtggagggcgccgcccaatcgagctgccgcaaggccttccacatcttcatgacggac
ggcgactacaacttcttcggcttcaacccggatcccgcggcgctcaacatgccggccatc
ggcaacgcggatggaacgagtcgcgccctgcctgacgccgtgacctatgtgccgcgcgcg
ccctacaaggacaacgcgggtgccgtcagcaacagcgccaactggaggaagtacggttcc
gggtggaggccgacggcggaataccggcccacgttggccgacatggcatttcactactgg
gccactgacctgcagcccgatgtccccaacaaactcaagaagatcgttgccgagcccggc
aatgcgactgtaggaaaggcgacggtcccagagtactggaaccccaagaacgatcccgcc
acttggcagcacctgatcacctacaccatcgggttcggcgctgcctcgtcgtgggcgggc
acgccggccatttcagcgaatgcgtcgcagccgacctacagtggggactatgcaggactg
gtcgatggaaccgctgcctggcggaatccgttggcgagcacgctggaaacgacggagttc
acctggaacgatggaagcgtgacaacgggaaccccgcgctggagttccggcggtggtgct
tatggttattaccacgagagggccgacaacgccgccgccgtgcgcatggacctctggcac
gccgcgctcaacagccgcggcaccttcacgccagcggcgaatgcgaaggcgctcagcgat
gccttccggtccatcctctcgcagatcctgctcaacaccagtgcctcgctgacctcgatc
tcggccagcggctccagggtttcgaccgccacttcggcctaccaggccggctacgacacg
gccgactggtcgggcaagctgacggccactccgttcggcagcaatggcaagctggccgcc
gcgcccgcgtggtcggcgcgcgaactgcttgatgcgcgcatggctgtgcccggcgcgcac
gacggcaatcgcaaggtgctgagcttctcgggcaccagcgccgcggccagcggggcgggc
gtgccgtttcggtgggccaacctgagcgaggcgcagaaggcggcgctcaagggcagcacc
gccaccgacgcggcaagcaccgcactcggccagggcgtgctcgacttcctgcgcggcgac
cgcagcaacgagggcgccggcctcaacctgcgcaagcgcggccatgtgctgggggacatc
gtgggctccagcgtccggtatgtggggaagcccaacagcggcttcacccatgaaggctat
gccgcattcgcctcgaccatcgcccgcgcgccgatggtctatgtgggtgccaacgacggc
atgctgcatgccttcaacgcgggcaccggccaggaggcgttcgcctatgtgccggaaggc
gtctatggcacggcggcggcgccccagctcaagaagctcagcgaaagcacctactcgcac
aggtactacgtcgacggcagcccgttcgtggccgacatctacatgggttcggccgccgac
gccaaggccaccgacaccgagaaggcgaagctgtggaagtccttcctcgtggggacgctg
ggggcgggcggcaaggggtatttcgtgctcgacgtcaccaagcccgagaacatcggcgag
gccaacgccgccggcgtggccctgatcgataccaccgcccttgccgacgacgacctcggc
caccagttccagcaacccgtgctcgattccttttcgaggcgcgcgctgcaggtggcgcgg
ctcaacaacggccgcagggccgtgatcctgggcaacggctacaacagcacgagcgagaag
gcgatgctgtggatccagtacctcgacggcgacaagtccgtgctgaagatccccgcgccg
gccacgcaggccgccggcaccggcaacgggctgtcggcaccgcaggtggtggacagcaac
ggcgatggcaaggtcgactacgtctatgccggcgacctgctcggcaatctctggaagttc
gacctgagcagcgccaagagcagcgactggaaggccaccctgggcgcatcgagcctggac
gacgcgccgctgttcgccgccggcgccacgcagccgatcacggccgcgccgctggtcgtc
gaccatccgcgcggcggctacatggtgatgttcggcaccggccggctgtttgccgccggc
gacgaaggcagcaccgcccagcagtacctgtacggcgtctgggaccgcgccaacggcagc
acgggcaccgcggcgctggccgacctggtggcgcagaccatcggaaccggcacggtcaag
gaaggcgacgtggaattccgcaccgcgtcgaaccacggcgtgagctacagcggctcgggc
ggcaagcgcggctggtacctccagctgggaaccgccggcgaacgcatcgtctatccaggc
gatgcgctgagcggcagcgcggggctgttctcgtccaccattcccggttcggcgagcaat
tcgctcgactgcgcgccgggcaccagcgacgacggctggtcgatggtggtcgacttcttc
agcggcgtggtccccgacggcattgcctacaacggctccaccagcgcgctgggcagctac
ctcggcttccggaaccactcaggccgcgacgacatcgtcttccggccgcaggacgccgct
gaaaaaggcaagcacgtgatctgcaatgcggccggcggctgcaacgagaccgagctgccg
caagccgtgcgccgcttcggctggcgcaacctgatctcgtcgaactga
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