KEGG   Variovorax paradoxus S110: Vapar_3108
Entry
Vapar_3108        CDS       T00916                                 
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
vap  Variovorax paradoxus S110
Pathway
vap00740  Riboflavin metabolism
vap01100  Metabolic pathways
vap01110  Biosynthesis of secondary metabolites
vap01240  Biosynthesis of cofactors
vap02024  Quorum sensing
Module
vap_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:vap00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    Vapar_3108
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Vapar_3108
Enzymes [BR:vap01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     Vapar_3108
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     Vapar_3108
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-ProteinID: ACS19727
UniProt: C5CPY8
LinkDB
Position
1:3268580..3269707
AA seq 375 aa
MTNANEIVNFMAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMA
LRDAAARGHSVAGATAFVTLEPCAHHGRTGPCCDALAAAGIGRVVASLADPNPLVAGKGF
ERLRAAGVAVEVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWIT
SEPARADGHAWRARASAVLTGVGTVLEDDPRLDVRLVETTRQPHVVIVDSQLQTPPGARI
FMAGRPVWIYAAAQDEAKAAALQARGATIAYLPNAQGKVDLAAMLRDLARREVNELHVES
GHKLNGSLLREGLVDELLVYLAPKLIGDGLDMASGIHTGGPLADLAGALPLEFRTIERIG
PDLRIVARVAGRDAF
NT seq 1128 nt   +upstreamnt  +downstreamnt
atgacaaatgcaaatgaaattgtgaatttcatggcccaggccctggatctcgcacgccag
gccgggccggagaccgatcccaatccgcgcgtcggctgcgtgctggtggacgcgaacggc
gcggtgatcggccaaggccgcacccagcaggtcggcggcccgcatgccgaggtcatggcg
ctgcgcgatgccgcggcgcgcggccattcggtggccggcgccaccgccttcgtcacgctc
gagccctgcgcgcaccatggccgcaccggtccttgctgcgatgcgctggcggcggcgggc
atcggccgggtggtggcgtcgttggccgatcccaacccgctggtcgcgggcaagggcttc
gaacggctgcgcgcggcaggcgtggcggtcgaggtagggccgggcgcggaggaagcgcgc
gaactcaacatcggctttttcagccgcatggtccgcaagacgccctgggtgcggctcaag
gccgccgcctcgctggacggcaagaccggcctgcgcaacggcgtgagccaatggatcacc
tcggaaccggcgcgcgccgacggccacgcctggcgggcgcgggccagcgcggtgctgacc
ggcgtgggcacggtgctggaggacgatccccggctcgacgtgcggcttgtggaaaccacg
cgccagccgcacgtggtgatagtcgacagccaattgcagaccccgcccggcgcgcggatc
ttcatggccgggcggcccgtctggatctacgccgcggcgcaggacgaggccaaggccgcc
gcgttacaagcgcgtggcgccaccattgcctacctgcccaatgcacagggcaaggtcgac
ctggccgcaatgctgcgggatctggcccggcgcgaggtcaacgagctccacgtcgagtcc
ggccacaagctcaacggctcgctgctgcgcgagggcctggtcgacgaactgctggtgtac
ctggcgcccaagctcatcggcgacgggctcgacatggcttccggcatccacaccggcgga
ccgctggccgacctggccggcgcgctgccgctggaattcaggaccatcgagcggatcggg
ccggacctgcggatcgtggcccgggtcgccggaagggacgctttctag

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